chmille4’s gists

chmille4 / index.html

Last active December 17, 2015 19:33

Iobio.viz Gene Modal

	<!DOCTYPE html>
	<html>
	<head>
	<script src="https://cdnjs.cloudflare.com/ajax/libs/d3/3.5.5/d3.min.js" charset="utf-8"></script>
	<script src="http://iobio.io/public/js/iobio.viz.min.js"></script>
	<link rel="stylesheet" type="text/css" href="http://iobio.io/public/css/iobio.viz.min.css">
	<style type="text/css">
	body {
	font-family: "Helvetica Neue", Helvetica, Arial, sans-serif;
	margin: auto;

chmille4 / index.html

Last active May 2, 2016 16:43

Iobio.viz Alignment Chart

	<!DOCTYPE html>
	<html>
	<head>
	<script src="https://cdnjs.cloudflare.com/ajax/libs/d3/3.5.5/d3.min.js" charset="utf-8"></script>
	<script src="http://iobio.io/public/js/iobio.viz.min.js"></script>
	<link rel="stylesheet" type="text/css" href="http://iobio.io/public/css/iobio.viz.min.css">
	<style type="text/css">
	body {
	font-family: "Helvetica Neue", Helvetica, Arial, sans-serif;
	margin: auto;

chmille4 / index.html

Last active December 4, 2015 15:56

Iobio.viz Line Chart

	<!DOCTYPE html>
	<html>
	<head>
	<script src="https://cdnjs.cloudflare.com/ajax/libs/d3/3.5.5/d3.min.js" charset="utf-8"></script>
	<script src="http://iobio.io/public/js/iobio.viz.min.js"></script>
	<link rel="stylesheet" type="text/css" href="http://iobio.io/public/css/iobio.viz.min.css">
	<style type="text/css">
	body {
	font-family: "Helvetica Neue", Helvetica, Arial, sans-serif;
	margin: auto;

chmille4 / index.html

Last active December 17, 2015 19:35

Iobio.viz BarViewer Chart

	<!DOCTYPE html>
	<html>
	<head>
	<script src="https://cdnjs.cloudflare.com/ajax/libs/d3/3.5.5/d3.min.js" charset="utf-8"></script>
	<script src="http://iobio.io/public/js/iobio.viz.min.js"></script>
	<link rel="stylesheet" type="text/css" href="http://iobio.io/public/css/iobio.viz.min.css">
	<style type="text/css">
	body {
	font-family: "Helvetica Neue", Helvetica, Arial, sans-serif;
	margin: auto;

chmille4 / index.html

Last active December 17, 2015 19:36

Iobio.viz Bar Chart

	<!DOCTYPE html>
	<html>
	<head>
	<script src="https://cdnjs.cloudflare.com/ajax/libs/d3/3.5.5/d3.min.js" charset="utf-8"></script>
	<script src="http://iobio.io/public/js/iobio.viz.min.js"></script>
	<link rel="stylesheet" type="text/css" href="http://iobio.io/public/css/iobio.viz.min.css">
	<style type="text/css">
	body {
	font-family: "Helvetica Neue", Helvetica, Arial, sans-serif;
	margin: auto;

chmille4 / index.html

Last active May 4, 2016 17:11

Iobio.viz Pie/Donut Chart

	<!DOCTYPE html>
	<html>
	<head>
	<script src="https://cdnjs.cloudflare.com/ajax/libs/d3/3.5.5/d3.min.js" charset="utf-8"></script>
	<script src="http://iobio.io/public/js/iobio.viz.min.js"></script>
	<link rel="stylesheet" type="text/css" href="http://iobio.io/public/css/iobio.viz.min.css">

	<style type="text/css">
	body {
	font-family: "Helvetica Neue", Helvetica, Arial, sans-serif;

chmille4 / gist:4253645

Created December 10, 2012 21:43

Make scribl scrollable and zoomable with jQRangeSlider

	<!DOCTYPE>
	<html>
	<head>
	<script src="http://chmille4.github.com/Scribl/js/Scribl.1.0.min.js"></script>
	<script src="http://chmille4.github.com/Scribl/js/genbankData.js"></script>
	<link rel="stylesheet" id="themeCSS" href="http://chmille4.github.com/Scribl/css/iThing.css">
	<script src="https://ajax.googleapis.com/ajax/libs/jquery/1.7.1/jquery.js"></script>
	<script src="http://ajax.googleapis.com/ajax/libs/jqueryui/1.9.2/jquery-ui.min.js"></script>
	<script src="http://static.tumblr.com/fcdode8/Giymeu17u/jquery.mousewheel.min.js"></script>
	<script src="http://static.tumblr.com/fcdode8/WVbmeu18t/jqallrangesliders-min.js"></script>

chmille4 / mouseEvents.html

Created January 25, 2011 23:11

scribl generated chart with event handling

	<!DOCTYPE HTML>
	<html lang="en">
	<head>
	<script src="https://github.com/chmille4/Scribl/raw/master/lib/Scribl.events.js" ></script>
	<script src="https://github.com/chmille4/Scribl/raw/master/lib/Scribl.gene.js" ></script>
	<script src="https://github.com/chmille4/Scribl/raw/master/lib/Scribl.js" ></script>
	<link rel="stylesheet" type="text/css" href="../css/demos.css" />

	<script>

chmille4 / scribl_demo.js

Created January 13, 2011 18:47

simple demo of scribl bioinformatic charting library

	// Get Canvas and Create Chart
	var canvas = document.getElementById(canvasName);

	// Create Chart with canvas, width
	chart = new Scribl(canvas, 500);

	// Add Gene with position, length, orientation
	gene1 = chart.addGene( 5, 750 , '+');

	// Draw Chart

chmille4 / BioRuby_Ace_Parser_Example.rb

Created October 7, 2010 15:36

Ace Parser For BioRuby

	require 'bio-assembly'

	# ace file path
	asm = Bio::Assembly.new("data.ace", :ace)

	# iterate through contigs (streams each contig)
	asm.each_contig do \|contig\|

	# print name and consensus seq
	puts contig.name

Chase Miller chmille4