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Iobio.viz Gene Modal
Raw
readme.md

A gene modal chart that dispalys multiple transcripts

Raw
index.html
<!DOCTYPE html>
<html>
<head>
<script src="https://cdnjs.cloudflare.com/ajax/libs/d3/3.5.5/d3.min.js" charset="utf-8"></script>
<script src="http://iobio.io/public/js/iobio.viz.min.js"></script>
<link rel="stylesheet" type="text/css" href="http://iobio.io/public/css/iobio.viz.min.css">
<style type="text/css">
body {
font-family: "Helvetica Neue", Helvetica, Arial, sans-serif;
margin: auto;
position: relative;
width: 960px;
}
.iobio-gene .utr rect { fill: rgba(120,176,194,0.6); stroke: rgb(120,176,194); }
.iobio-gene .cds rect { fill: rgba(120,176,194,0.6); stroke: rgb(120,176,194); }
</style>
</head>
<body>
<div id="gene-viz"></div>
<script>
var trackHeight = 20,
m = [44, 60, 30+trackHeight, 120],
w = 960,
h = 500;
var format = d3.format("0,000");
d3.json('transcript.json', function(data) {
var selection = d3.select("#gene-viz").datum( data );
var chart = iobio.viz.gene()
.start(function(d) { return d.start; })
.end(function(d) { return d.end; })
.title(function(d) { return d.transcript_id; })
.height(h)
.width(w)
.trackHeight(trackHeight)
.margin({top: m[0], right: m[1], bottom: m[2], left:m[3]})
.tooltip(function(d) { return d.feature_type + ' ' + format(d.start) + ' - ' + format(d.end); })
chart( selection );
});
</script>
</body>
</html>
Raw
transcript.json
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