TnT tree example showing how to render different labels in the same tree. The example first defines two different label renderers (two instances of tnt.tree.label.text). One to render internal labels taking the text from its branch length node property, and placing the labels in the upper left side of the node. The second to render leaf labels containing the name property of the node (default property) and placing them at the right of the node (default position). A third renderer (a general tnt.tree.label) uses the display and transform methods of one or the other depending on the node's type (leaf or not). This last label renderer is the one passed to the tree visualization.
different labels in the same tree
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
<!DOCTYPE html> | |
<meta charset="utf-8"> | |
<head> | |
<link rel="stylesheet" href="http://tntvis.github.io/tnt.tree/build/tnt.tree.css" type="text/css" /> | |
<script src="http://d3js.org/d3.v3.min.js"></script> | |
<script src="http://tntvis.github.io/tnt.tree/build/tnt.tree.min.js"></script> | |
<script src="render.js"></script> | |
</head> | |
<body> | |
<div id="mytree"></div> | |
<script> | |
render (document.getElementById("mytree")); | |
</script> | |
</body> |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
var render = function (div) { | |
"use strict"; | |
var internal_label = tnt.tree.label.text() | |
.text(function (node) { | |
return node.data().branch_length; | |
}) | |
.fontweight("bold") | |
.fontsize(13) | |
.color("red") | |
.transform(function (node) { | |
return { | |
"translate" : [-50, -5], | |
"rotate" : -0 | |
}; | |
}); | |
var leaf_label = tnt.tree.label.text() | |
.fontsize(14); | |
var node_label = tnt.tree.label() | |
.width(leaf_label.width()) | |
.height(30) | |
.display(function (node) { | |
if (node.is_leaf()) { | |
return leaf_label.display().call(this, node, "vertical"); | |
} else { | |
return internal_label.display().call(this, node, "vertical"); | |
} | |
}) | |
.transform(function (node) { | |
if (node.is_leaf()) { | |
return leaf_label.transform().call(this, node, "vertical"); | |
} else { | |
return internal_label.transform().call(this, node, "vertical"); | |
} | |
}); | |
var tree = tnt.tree(); | |
tree | |
.data (tnt.tree.parse_newick(newick)) | |
.label (node_label) | |
.layout(tnt.tree.layout.vertical() | |
.width(950) | |
.scale(true) | |
); | |
tree(div); | |
}; | |
var newick = "(((Crotalus_oreganus_oreganus_cytochrome_b:0.00800,Crotalus_horridus_cytochrome_b:0.05866):0.04732,(Thamnophis_elegans_terrestris_cytochrome_b:0.00366,Thamnophis_atratus_cytochrome_b:0.00172):0.06255):0.00555,(Pituophis_catenifer_vertebralis_cytochrome_b:0.00552,Lampropeltis_getula_cytochrome_b:0.02035):0.05762,((Diadophis_punctatus_cytochrome_b:0.06486,Contia_tenuis_cytochrome_b:0.05342):0.01037,Hypsiglena_torquata_cytochrome_b:0.05346):0.00779);"; |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment