fdlk’s gists

fdlk / ping.py

Last active February 9, 2021 13:33

Ping script for FAIR datapoint home

	import urllib.request
	import json

	body = json.dumps({'clientUrl': 'http://localhost/api/fdp'}).encode('utf-8')
	req = urllib.request.Request('https://home.fairdatapoint.org')
	req.add_header('Content-Type', 'application/json; charset=utf-8')
	response = urllib.request.urlopen(req, body)

fdlk / subsetting.R

Created May 1, 2020 12:07

Reproduce https://github.com/datashield/dsBase/issues/56

	library(remotes)
	install_github("molgenis/molgenis-r-datashield")
	install_github("datashield/dsBaseClient@v6.0-dev")
	install_github("datashield/DSI")
	install_github("obiba/opalr")
	install_github("datashield/DSOpal")
	library(DSI)
	library(DSOpal)
	library(dsBaseClient)
	server <- c("opal-dsi")

fdlk / openid-code-flow.R

Last active July 9, 2020 13:43

	.get_info <- function(armadillo_server) {
	info_url <- armadillo_server
	urltools::path(info_url) <- "actuator/info"
	response <- httr::GET(info_url)
	httr::stop_for_status(response, task="fetch server info")
	return(httr::content(response))
	}

	.discover_endpoint <- function(auth_server) {
	openid_config_url <- auth_server

fdlk / push.py

Last active November 5, 2019 20:55

scrape hashicorp kv store contents

	import json
	import subprocess

	# read file
	with open('scraped.json', 'r') as scraped:
	data=scraped.read()

	# parse file
	obj = json.loads(data)

fdlk / run-ibd-script.md

Last active August 31, 2017 11:27

R plot on homepage

    install python package manager pip in local user dir

> curl "https://bootstrap.pypa.io/get-pip.py" -o "get-pip.py”
> python get-pip.py --user
> rm get-pip.py

install requests module in user dir

fdlk / .block

Last active July 8, 2017 21:26 — forked from mbostock/.block

Zoomable Circle Packing

	license: gpl-3.0
	height: 960

fdlk / sonarqube-slack-notify.js

Last active June 4, 2018 16:21

A hook.io microservice that transforms a sonarqube webhook into a slack notification webhook

	var slack = require('slack-notify')
	var moment = require('moment-timezone')

	function formatFloat(value) {
	return (value && !isNaN(value)) ? parseFloat(value).toFixed(1) : value
	}

	function formatValue(value) {
	if(typeof value == 'number') {
	return value.toFixed(1)

fdlk / rsql.pegjs

Created January 4, 2017 23:58

rsql grammar for pegjs

	/*
	* RSQL parser
	*/

	or = head:and tail:("," and)* {
	if(tail.length == 0) return head;
	var result = [head], i;
	for (i = 0; i < tail.length; i++) {
	result.push(tail[i][1]);
	}

fdlk / pulls.py

Last active March 16, 2017 15:15

Fetch pull requests through github API

	from __future__ import unicode_literals
	import requests
	import json
	import argparse

	parser = argparse.ArgumentParser(description="""Retrieves pull request numbers and titles from the GitHub REST API.
	Only merged pull requests will be listed.""")
	parser.add_argument('-t', '--token', required=True,
	help="""Generate an OAUTH token on your GitHub personal settings page, under Personal access tokens,
	and provide it as an argument here. You need not give it any scopes.""")

fdlk / dicom-tables.xslt

Last active August 29, 2015 14:08

Parse DICOM tags table

	<?xml version="1.0" encoding="UTF-8"?>
	<xsl:stylesheet version="2.0"
	xmlns:xsl="http://www.w3.org/1999/XSL/Transform"
	xmlns:db="http://docbook.org/ns/docbook"
	xmlns:fn="http://www.w3.org/2005/xpath-functions">

	<xsl:output method="text" encoding="UTF-8" indent="no" />

	<xsl:strip-space elements="*"/>
	<xsl:template match="/">

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