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| license: mit |
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| <!DOCTYPE html> | |
| <head> | |
| <meta charset="utf-8"> | |
| <script src="https://d3js.org/d3.v5.min.js"></script> | |
| </head> | |
| <body> | |
| <svg id="svg" width="960" height="500" viewBox="-480 -250 960 500"> | |
| <circle r="20" stroke="steelblue" stroke-opacity="0.5" fill="none"></circle> | |
| <circle r="100" stroke="brown" stroke-opacity="0.5" fill="none"></circle> | |
| <circle r="240" stroke="green" stroke-opacity="0.5" fill="none"></circle> | |
| </svg> | |
| <script> | |
| var svg = d3.select("svg"); | |
| var width = svg.attr("width"); | |
| var height = svg.attr("height"); | |
| //alert(width+"-"+height) | |
| var simulation = d3.forceSimulation(); | |
| var promises = [d3.csv("nodes.csv"), d3.csv("links.csv")]; | |
| Promise.all(promises).then(function(data) { | |
| var links = data[1]; | |
| var nodes = data[0]; | |
| console.log(links) | |
| simulation | |
| .force("link", d3.forceLink().id(function(d) { | |
| return d.node; | |
| })) | |
| .nodes(nodes) | |
| .force("collide", d3.forceCollide().radius(10)) | |
| .force("r", d3.forceRadial(function(d) { | |
| // console.log(d); | |
| if (d.group === "compound") { | |
| return 240; | |
| } else { | |
| return d.group === "annotation" ? 0 : 100; | |
| } | |
| })); | |
| // Create the link lines. | |
| var link = svg.append("g") | |
| .attr("class", "links") | |
| .selectAll("line") | |
| .data(links) | |
| .enter().append("line") | |
| .attr("stroke", "black") | |
| .attr("stroke-width", 4) | |
| .attr("class", function(d) { | |
| return "link " + d.type; | |
| }); | |
| /*var link = svg.append("g") | |
| .data(links) | |
| .enter().append("line") | |
| .attr("class", "links")*/ | |
| // Create the node circles. | |
| var node = svg.append("g") | |
| .attr("class", "node") | |
| .selectAll("circle") | |
| .data(nodes) | |
| .enter().append("circle") | |
| .attr("r", 8) | |
| .attr("class", function(d) { | |
| return d.group; | |
| }); | |
| //console.log(node); | |
| //add the words | |
| /*node.append("text") | |
| .attr("dx", 12) | |
| .attr("dy", ".35em") | |
| .text(function(d) { return d.node }); */ | |
| simulation.force("link").links(links); | |
| simulation.on("tick", ticked); | |
| function ticked() { | |
| node | |
| .attr("cx", function(d) { | |
| return d.x; | |
| }) | |
| .attr("cy", function(d) { | |
| return d.y; | |
| }); | |
| link.attr("x1", function(d) { | |
| return d.source.x; | |
| }) | |
| .attr("y1", function(d) { | |
| return d.source.y; | |
| }) | |
| .attr("x2", function(d) { | |
| return d.target.x; | |
| }) | |
| .attr("y2", function(d) { | |
| return d.target.y; | |
| }); | |
| } | |
| }); | |
| function id(d) { | |
| return d.id; | |
| } | |
| </script> | |
| </body> |
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| source | target | type | |
|---|---|---|---|
| T24871 | PF05257 | annotation | |
| T27222 | PF05257 | annotation | |
| T33516 | PF01529 | annotation | |
| T33516 | PF05257 | annotation | |
| T33516 | PF11669 | annotation | |
| T33937 | PF05257 | annotation | |
| T24871 | C561727 | bioactivity | |
| T24871 | C337527 | bioactivity | |
| T24871 | C585910 | bioactivity |
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| node | group | |
|---|---|---|
| C236103 | compound | |
| C327961 | compound | |
| C337527 | compound | |
| C376038 | compound | |
| C543486 | compound | |
| C561727 | compound | |
| C585910 | compound | |
| T24871 | target | |
| T27222 | target | |
| T33516 | target | |
| T33937 | target | |
| OG5_135897 | annotation | |
| PF01529 | annotation | |
| PF05257 | annotation | |
| PF11669 | annotation |
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