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Alexander Peltzer apeltzer

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  • Boehringer Ingelheim
  • Biberach an der Riss, Germany
  • 07:58 (UTC +02:00)
  • LinkedIn in/apeltzer
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#Based on Stephen Turners and Wei Shen's ideas
# Works fine if your ID in the beginning is sort of (hehe) unique.
# Comment out the cat part to run the dry run and check whether your output makes sense.
ls *R1* | cut -d _ -f 1 | sort | uniq \
| while read id; do \
echo "$id*R1*.fastq.gz >> $id.R1.fastq.gz";
cat $id*R1*.fastq.gz >> $id.R1.fastq.gz;
echo "$id*R2*.fastq.gz >> $id.R2.fastq.gz";
cat $id*R2*.fastq.gz >> $id.R2.fastq.gz;
done
@apeltzer
apeltzer / PKGBUILD
Created October 11, 2018 12:14
AUR-Singularity3.0
# Maintainer: Maciej Sieczka <msieczka at sieczka dot org>
# Go transition by Alex Peltzer <alexpe.aur@mailbox.org>
pkgname='singularity-container'
pkgver='3.0.0'
pkgrel='0'
pkgdesc='Container platform focused on supporting "Mobility of Compute".'
arch=('i686' 'x86_64')
url='http://sylabs.io'
_url="github.com/sylabs/singularity"

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