Andrzej Zielezinski aziele
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| # This module is for handling BLAST output lists (in -outfmt 6/ -m8 format). | |
| from itertools import groupby | |
| class Hsp: | |
| """Store information about single HSP in an alignment hit. | |
| Members: | |
| qid Query Id | |
| sid Subject Id |
aziele
/ alignment.py
Created
April 10, 2017 10:59
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| #This software is a free software. Thus, it is licensed under GNU General Public License. | |
| #Python implementation to Smith-Waterman Algorithm for Homework 1 of Bioinformatics class. | |
| #Forrest Bao, Sept. 26 <http://fsbao.net> <forrest.bao aT gmail.com> | |
| # zeros() was origianlly from NumPy. | |
| # This version is implemented by alevchuk 2011-04-10 | |
| def zeros(shape): | |
| retval = [] | |
| for x in range(shape[0]): | |
| retval.append([]) |