Created
February 9, 2023 14:10
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Conversion of gene to frame
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| series = [] | |
| d = {} | |
| for row in raw: | |
| try: | |
| if len(row) == 0: | |
| continue | |
| if row.startswith("!sample_table_end"): | |
| for k in arr: | |
| if k in d: | |
| d[k] = [d[k]] | |
| series.append(d) | |
| d = {} | |
| continue | |
| if row.startswith("#") or row.startswith("ID_REF") or ("sample_table_begin" in row): | |
| continue | |
| if row.startswith("^") or row.startswith("!"): | |
| x = row.split(" ") | |
| a,b = x[0].strip(), " ".join(x[1:]).strip() | |
| if a in arr: | |
| if a not in d: | |
| d[a] = [] | |
| else: | |
| d[a] = d[a] + [b[2:]] | |
| else: | |
| d[a] = [b[2:]] | |
| else: | |
| a,b = row.split("\t") | |
| d[a.strip()] = [b.strip()] | |
| except Exception as e: | |
| print(row, e) | |
| break |
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