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canimus/format_genbank.py

Created January 14, 2024 19:31
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Format genbank sequence
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format_genbank.py
def format_sequence(sequence: str):
"""Format a DNA sequence as genbank file"""
counter = 1
print(f"{counter}".rjust(4, " "), end=" ")
for a,b in zip(range(0,len(sequence)+1, 10), range(10, len(sequence)+1, 10)):
print(sequence[a:b], end="")
if ((counter % 6) == 0) and (b < (len(sequence)-1)):
print("")
print(f'{((counter*10) + 1)}'.rjust(4, " "), end=" ")
else:
print(" ", end="")
counter += 1
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