Example of sequence track in TnT Genome. Zoom in to reveal the genomic sequence of the region in the board.
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January 12, 2016 16:44
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Sequence track
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| <!DOCTYPE html> | |
| <head> | |
| <link rel="stylesheet" href="http://tntvis.github.io/tnt.genome/build/tnt.genome.css" type="text/css" /> | |
| <style> | |
| #mydiv { | |
| margin-top: 50px; | |
| } | |
| </style> | |
| <script src="http://d3js.org/d3.v3.min.js"></script> | |
| <script src="http://tntvis.github.io/tnt.genome/build/tnt.genome.min.js"></script> | |
| </head> | |
| <body> | |
| <div id="mydiv"></div> | |
| <script> | |
| var genome = tnt.board.genome().species("human").gene("brca2").width(950); | |
| var gene_track = tnt.board.track() | |
| .height(200) | |
| .color("white") | |
| .display(tnt.board.track.feature.genome.gene() | |
| .color("#550055") | |
| ) | |
| .data(tnt.board.track.data.genome.gene()); | |
| var sequence_track = tnt.board.track() | |
| .height(30) | |
| .color("white") | |
| .display(tnt.board.track.feature.genome.sequence()) | |
| .data(tnt.board.track.data.genome.sequence() | |
| .limit(150) | |
| ); | |
| genome | |
| .zoom_in(100) | |
| .add_track(sequence_track) | |
| .add_track(gene_track); | |
| genome(document.getElementById("mydiv")); | |
| genome.start(); | |
| </script> | |
| </body> |
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