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jyguo/index.html

Created February 4, 2015 20:52
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Raw
index.html
<!DOCTYPE html>
<meta charset="utf-8">
<style>
.node {
stroke: #fff;
stroke-width: 1.5px;
}
.link {
stroke: #999;
stroke-opacity: .6;
}
</style>
<body>
<script src="http://d3js.org/d3.v3.min.js"></script>
<script>
var width = 1800,
height = 850;
var color = d3.scale.category10();
var force = d3.layout.force()
.charge(-12)
.linkDistance(30)
.size([width, height]);
var svg = d3.select("body").append("svg")
.attr("width", width)
.attr("height", height);
d3.json("network.json", function(error, graph) {
force
.nodes(graph.nodes)
.links(graph.links)
.start();
var link = svg.selectAll(".link")
.data(graph.links)
.enter().append("line")
.attr("class", "link")
.style("stroke-width", function(d) { return Math.sqrt(d.value); });
var node = svg.selectAll(".node")
.data(graph.nodes)
.enter().append("circle")
.attr("class", "node")
.attr("r", 5)
.style("fill", function(d) { return color(d.group); })
.call(force.drag);
node.append("title")
.text(function(d) { return d.name; });
force.on("tick", function() {
link.attr("x1", function(d) { return d.source.x; })
.attr("y1", function(d) { return d.source.y; })
.attr("x2", function(d) { return d.target.x; })
.attr("y2", function(d) { return d.target.y; });
node.attr("cx", function(d) { return d.x; })
.attr("cy", function(d) { return d.y; });
});
});
</script>
Raw
network.json
{
"nodes": [
{
"group": "2",
"name": "MhA1_Contig0.frz3.fgene8"
},
{
"group": "1",
"name": "Contig0_141744"
},
{
"group": "2",
"name": "X0.CUFF.8.1_1"
},
{
"group": "2",
"name": "MhA1_Contig100.frz3.gene12"
},
{
"group": "1",
"name": "Contig100_34234"
},
{
"group": "2",
"name": "MhA1_Contig1005.frz3.gene10"
},
{
"group": "1",
"name": "Contig1005_26809"
},
{
"group": "2",
"name": "X1025.CUFF.8.2_1"
},
{
"group": "1",
"name": "Contig1025_22185"
},
{
"group": "2",
"name": "X515.CUFF.11.1_1"
},
{
"group": "1",
"name": "Contig1033_33260"
},
{
"group": "2",
"name": "MhA1_Contig185.frz3.gene3"
},
{
"group": "2",
"name": "MhA1_Contig185.frz3.gene37"
},
{
"group": "2",
"name": "MhA1_Contig185.frz3.gene5"
},
{
"group": "1",
"name": "Contig104_25969"
},
{
"group": "2",
"name": "MhA1_Contig104.frz3.gene21"
},
{
"group": "1",
"name": "Contig104_83423"
},
{
"group": "2",
"name": "MhA1_Contig1131.frz3.gene7"
},
{
"group": "1",
"name": "Contig1051_25016"
},
{
"group": "1",
"name": "Contig108_107986"
},
{
"group": "2",
"name": "X108.CUFF.20.1_3"
},
{
"group": "1",
"name": "Contig11_60306"
},
{
"group": "2",
"name": "MhA1_Contig1291.frz3.gene2"
},
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"group": "2",
"name": "MhA1_Contig1292.frz3.gene12"
},
{
"group": "1",
"name": "Contig111_18874"
},
{
"group": "2",
"name": "X113.CUFF.1.1_33"
},
{
"group": "2",
"name": "MhA1_Contig2018.frz3.gene9"
},
{
"group": "1",
"name": "Contig1128_37300"
},
{
"group": "2",
"name": "MhA1_Contig1627.frz3.gene2"
},
{
"group": "1",
"name": "Contig1146_24593"
},
{
"group": "2",
"name": "MhA1_Contig1628.frz3.gene5"
},
{
"group": "2",
"name": "MhA1_Contig2462.frz3.gene3"
},
{
"group": "2",
"name": "MhA1_Contig2462.frz3.gene4"
},
{
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"name": "MhA1_Contig447.frz3.gene7"
},
{
"group": "2",
"name": "MhA1_Contig755.frz3.gene4"
},
{
"group": "2",
"name": "X1627.CUFF.2.1_9"
},
{
"group": "2",
"name": "X2962.CUFF.2.1_2"
},
{
"group": "2",
"name": "MhA1_Contig2954.frz3.gene2"
},
{
"group": "1",
"name": "Contig1155_4352"
},
{
"group": "1",
"name": "Contig1172_14041"
},
{
"group": "2",
"name": "MhA1_Contig284.frz3.fgene1"
},
{
"group": "1",
"name": "Contig118_10221"
},
{
"group": "2",
"name": "X933.CUFF.13.1_11"
},
{
"group": "2",
"name": "MhA1_Contig118.frz3.gene35"
},
{
"group": "1",
"name": "Contig118_106658"
},
{
"group": "2",
"name": "MhA1_Contig118.frz3.gene37"
},
{
"group": "2",
"name": "MhA1_Contig118.frz3.gene44"
},
{
"group": "2",
"name": "MhA1_Contig118.frz3.gene55"
},
{
"group": "1",
"name": "Contig118_211898"
},
{
"group": "2",
"name": "MhA1_Contig309.frz3.gene52"
},
{
"group": "2",
"name": "MhA1_Contig309.frz3.gene53"
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{
"group": "2",
"name": "MhA1_Contig309.frz3.gene8"
},
{
"group": "2",
"name": "MhA1_Contig309.frz3.gene3"
},
{
"group": "1",
"name": "Contig118_241544"
},
{
"group": "1",
"name": "Contig118_269156"
},
{
"group": "2",
"name": "MhA1_Contig119.frz3.gene6"
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{
"group": "2",
"name": "MhA1_Contig309.frz3.fgene7"
},
{
"group": "2",
"name": "MhA1_Contig309.frz3.gene4"
},
{
"group": "2",
"name": "MhA1_Contig933.frz3.gene21"
},
{
"group": "1",
"name": "Contig118_4189"
},
{
"group": "1",
"name": "Contig1188_5047"
},
{
"group": "2",
"name": "MhA1_Contig2184.frz3.gene4"
},
{
"group": "2",
"name": "MhA1_Contig1915.frz3.fgene1"
},
{
"group": "1",
"name": "Contig1191_15482"
},
{
"group": "2",
"name": "MhA1_Contig1915.frz3.gene5"
},
{
"group": "2",
"name": "X1144.CUFF.3.1_2"
},
{
"group": "2",
"name": "MhA1_Contig121.frz3.gene19"
},
{
"group": "1",
"name": "Contig120_40334"
},
{
"group": "2",
"name": "MhA1_Contig320.frz3.gene40"
},
{
"group": "2",
"name": "MhA1_Contig722.frz3.fgene1"
},
{
"group": "2",
"name": "MhA1_Contig722.frz3.gene17"
},
{
"group": "2",
"name": "MhA1_Contig722.frz3.gene18"
},
{
"group": "2",
"name": "MhA1_Contig722.frz3.gene2"
},
{
"group": "2",
"name": "X120.CUFF.29.1_2"
},
{
"group": "1",
"name": "Contig1214_2310"
},
{
"group": "2",
"name": "MhA1_Contig110.frz3.fgene1"
},
{
"group": "2",
"name": "MhA1_Contig1214.frz3.fgene1"
},
{
"group": "2",
"name": "X605.CUFF.3.3_3"
},
{
"group": "2",
"name": "MhA1_Contig1277.frz3.gene12"
},
{
"group": "1",
"name": "Contig1237_11960"
},
{
"group": "2",
"name": "X298.CUFF.18.1_23"
},
{
"group": "2",
"name": "MhA1_Contig125.frz3.gene11"
},
{
"group": "1",
"name": "Contig125_16174"
},
{
"group": "2",
"name": "X125.CUFF.10.1_1"
},
{
"group": "2",
"name": "MhA1_Contig126.frz3.gene7"
},
{
"group": "1",
"name": "Contig126_3671"
},
{
"group": "1",
"name": "Contig127_22028"
},
{
"group": "1",
"name": "Contig1299_17561"
},
{
"group": "2",
"name": "MhA1_Contig2188.frz3.gene1"
},
{
"group": "2",
"name": "MhA1_Contig2246.frz3.fgene1"
},
{
"group": "2",
"name": "MhA1_Contig1149.frz3.fgene1"
},
{
"group": "1",
"name": "Contig1299_7859"
},
{
"group": "1",
"name": "Contig13_69321"
},
{
"group": "2",
"name": "MhA1_Contig990.frz3.gene27"
},
{
"group": "1",
"name": "Contig1305_17554"
},
{
"group": "1",
"name": "Contig1318_12328"
},
{
"group": "2",
"name": "X1319.CUFF.1.1_1"
},
{
"group": "2",
"name": "MhA1_Contig147.frz3.gene101"
},
{
"group": "1",
"name": "Contig133_1037"
},
{
"group": "2",
"name": "MhA1_Contig147.frz3.gene27"
},
{
"group": "1",
"name": "Contig134_13476"
},
{
"group": "2",
"name": "MhA1_Contig134.frz3.gene6"
},
{
"group": "2",
"name": "MhA1_Contig147.frz3.gene28"
},
{
"group": "2",
"name": "MhA1_Contig134.frz3.gene24"
},
{
"group": "1",
"name": "Contig134_50147"
},
{
"group": "2",
"name": "MhA1_Contig134.frz3.gene25"
},
{
"group": "2",
"name": "MhA1_Contig138.frz3.fgene1"
},
{
"group": "1",
"name": "Contig137_37746"
},
{
"group": "2",
"name": "MhA1_Contig138.frz3.gene15"
},
{
"group": "2",
"name": "MhA1_Contig342.frz3.gene56"
},
{
"group": "1",
"name": "Contig138_170349"
},
{
"group": "2",
"name": "X138.CUFF.28.1_2"
},
{
"group": "2",
"name": "X138.CUFF.39.1_1"
},
{
"group": "1",
"name": "Contig138_50945"
},
{
"group": "1",
"name": "Contig138_85871"
},
{
"group": "1",
"name": "Contig14_42779"
},
{
"group": "2",
"name": "X14.CUFF.20.1_10"
},
{
"group": "1",
"name": "Contig14_55963"
},
{
"group": "2",
"name": "MhA1_Contig1000.frz3.gene8"
},
{
"group": "2",
"name": "MhA1_Contig18.frz3.gene14"
},
{
"group": "1",
"name": "Contig14_75788"
},
{
"group": "2",
"name": "MhA1_Contig18.frz3.gene3"
},
{
"group": "2",
"name": "X18.CUFF.11.1_3"
},
{
"group": "1",
"name": "Contig140_14987"
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{
"group": "2",
"name": "X140.CUFF.2.1_10"
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{
"group": "2",
"name": "MhA1_Contig2018.frz3.gene8"
},
{
"group": "1",
"name": "Contig1421_12608"
},
{
"group": "2",
"name": "MhA1_Contig1229.frz3.gene8"
},
{
"group": "1",
"name": "Contig1428_19883"
},
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"group": "2",
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},
{
"group": "2",
"name": "MhA1_Contig1472.frz3.gene9"
},
{
"group": "1",
"name": "Contig1431_2222"
},
{
"group": "2",
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},
{
"group": "2",
"name": "MhA1_Contig1225.frz3.gene7"
},
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"name": "MhA1_Contig1431.frz3.gene12"
},
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},
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},
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"name": "Contig1431_25194"
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{
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},
{
"group": "1",
"name": "Contig145_11170"
},
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"group": "1",
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{
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},
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{
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{
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{
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},
{
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},
{
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},
{
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{
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},
{
"group": "1",
"name": "Contig180_35281"
},
{
"group": "2",
"name": "X722.CUFF.14.1_9"
},
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"name": "Contig185_100079"
},
{
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},
{
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},
{
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{
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"name": "MhA1_Contig36.frz3.gene26"
},
{
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},
{
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},
{
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"name": "Contig1903_7474"
},
{
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{
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},
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"name": "Contig196_52934"
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