margulies · April 22, 2020 12:47
diff --git a/steps_vted.sh b/steps_vted.sh
 # run the following conversion for each individual left and right hemisphere matrix separately

 # convert matrices to nifti1:
 wb_command -cifti-convert -to-nifti input.dconn.nii output.nii

 # convert matrices to vista:
 # after install lipsia:
 export dir=[directory with data]
 docker run -v ${dir}:${dir} lipsia vnifti -in ${dir}/output.nii -out ${dir}/output.v

 # Then run vted as described in the github documentation
	# run the following conversion for each individual left and right hemisphere matrix separately

	# convert matrices to nifti1:
	wb_command -cifti-convert -to-nifti input.dconn.nii output.nii

	# convert matrices to vista:
	# after install lipsia:
	export dir=[directory with data]
	docker run -v ${dir}:${dir} lipsia vnifti -in ${dir}/output.nii -out ${dir}/output.v

	# Then run vted as described in the github documentation