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Graph data visualization using d3js
Raw
README.md

Data visualization programming assignment 2

In this project, I downloaded 3 datasets from the UCI Network Data Repository.

I first had to write a python script gml2json to convert the graphml format into json.

I then created 2 pages that explored the 3 datasets using d3js.

In general, I found the force directed layouts more interesting but less readable, especially for the "adjnoun" dataset which had the most nodes. I'll tend to use the more readable radial layouts in the future projects, and would try to sort/cluster the data into more interesting displays.

Resources

Raw
adjnoun.gml
Creator "Mark Newman on Fri Jul 21 13:00:02 2006"
graph
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[
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[
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[
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[
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[
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[
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[
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[
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[
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[
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Raw
adjnoun.json
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{"source":98, "target":2},
{"source":98, "target":11},
{"source":98, "target":17},
{"source":98, "target":43},
{"source":98, "target":81},
{"source":99, "target":43},
{"source":99, "target":89},
{"source":100, "target":32},
{"source":100, "target":43},
{"source":101, "target":51},
{"source":101, "target":60},
{"source":102, "target":1},
{"source":102, "target":2},
{"source":102, "target":12},
{"source":102, "target":13},
{"source":102, "target":17},
{"source":102, "target":44},
{"source":102, "target":50},
{"source":102, "target":53},
{"source":102, "target":66},
{"source":102, "target":70},
{"source":103, "target":17},
{"source":103, "target":24},
{"source":103, "target":27},
{"source":103, "target":31},
{"source":103, "target":37},
{"source":103, "target":39},
{"source":103, "target":65},
{"source":103, "target":73},
{"source":104, "target":2},
{"source":104, "target":11},
{"source":104, "target":12},
{"source":104, "target":15},
{"source":104, "target":17},
{"source":104, "target":24},
{"source":104, "target":25},
{"source":104, "target":26},
{"source":104, "target":31},
{"source":104, "target":33},
{"source":104, "target":35},
{"source":104, "target":38},
{"source":104, "target":46},
{"source":104, "target":48},
{"source":104, "target":50},
{"source":104, "target":59},
{"source":104, "target":61},
{"source":104, "target":81},
{"source":104, "target":84},
{"source":104, "target":103},
{"source":105, "target":2},
{"source":105, "target":14},
{"source":105, "target":23},
{"source":105, "target":70},
{"source":105, "target":72},
{"source":105, "target":104},
{"source":106, "target":7},
{"source":106, "target":51},
{"source":106, "target":76},
{"source":106, "target":80},
{"source":106, "target":88},
{"source":106, "target":96},
{"source":107, "target":33},
{"source":107, "target":34},
{"source":108, "target":20},
{"source":108, "target":24},
{"source":108, "target":31},
{"source":108, "target":105},
{"source":109, "target":79},
{"source":110, "target":79},
{"source":110, "target":100},
{"source":111, "target":2}
]
}
Raw
gml2json.py
#!/usr/bin/env python
import sys
def gml_sub(blob):
lines = []
for line in blob.split('\n'):
line = line.strip()
lines.append(line)
blob = "\n".join(lines)
blob = blob.replace('\n\n', '\n')
blob = blob.replace(']\n', '},\n')
blob = blob.replace('[\n', '{')
blob = blob.replace('\n{', '\n {')
for s in ['id ', 'label ', 'source ', 'target ', 'value ']:
blob = blob.replace(s, '"%s":' % s.strip())
blob = blob.replace('\n"', ', "')
blob = blob.replace('\n}', '}')
return blob.strip('\n')
def main(graphfile):
"""
Converts GraphML file to json
Usage:
>>> python convert.py mygraph.gml
"""
with open(graphfile, 'r') as f:
blob = f.read()
blob = ''.join(blob.split('node')[1:])
nodes = blob.split('edge')[0]
edges = ''.join(blob.split('edge')[1:]).strip().rstrip(']')
nodes = gml_sub(nodes)
edges = gml_sub(edges)
print '{\n "nodes":['
print nodes.rstrip(',')
print ' ],\n "links":['
print ' ' + edges.rstrip(',')
print ' ]\n}\n'
if __name__ == '__main__':
main(sys.argv[1])
Raw
index.html
<!DOCTYPE html>
<html>
<head>
<meta charset="utf-8">
<title>D3 Force Directed Graph Visualization Demo</title>
<style>
body {
font-family: 'Source Sans Pro', sans-serif;
}
.link {
stroke: #999;
stroke-opacity: .6;
}
.node text {
pointer-events: none;
font: 10px sans-serif;
}
.button {
width: 200px;
margin: 1em;
}
</style>
</head>
<body>
<div id="option">
<input name="button0" type="button" class="button" value="Lesmis" onclick="read_json('lesmis.json')" />
<input name="button1" type="button" class="button" value="Karate" onclick="read_json('karate.json')" />
<input name="button2" type="button" class="button" value="AdjNoun" onclick="read_json('adjnoun.json')" />
</div>
Compare this to the <a href="index_radial.html">radial graph layout</a>.
<div id="graph"> </div>
<script src="https://cdnjs.cloudflare.com/ajax/libs/d3/3.5.6/d3.min.js"></script>
<script src="script.js"></script>
</body>
</html>
Raw
index_radial.html
<!DOCTYPE html>
<html>
<head>
<meta charset="utf-8">
<title>D3 Radial Graph Visualization Demo</title>
<!-- JavaScript Libraries //-->
<script src="https://cdnjs.cloudflare.com/ajax/libs/d3/3.5.6/d3.min.js"></script>
<!-- CSS Style //-->
<link href="style.css" rel="stylesheet" type="text/css">
</head>
<body>
<div id="option">
<input name="button0" type="button" class="button" value="Lesmis" onclick="read_json('lesmis.json')" />
<input name="button1" type="button" class="button" value="Karate" onclick="read_json('karate.json')" />
<input name="button2" type="button" class="button" value="AdjNoun" onclick="read_json('adjnoun.json')" />
</div>
Compare this to the <a href="index.html">force directed graph layout</a>.
<div align="center" id="circle"></div>
<script src="script_radial.js"></script>
</body>
</html>
Raw
karate.gml
Creator "Mark Newman on Fri Jul 21 12:39:27 2006"
graph
[
node
[
id 1
]
node
[
id 2
]
node
[
id 3
]
node
[
id 4
]
node
[
id 5
]
node
[
id 6
]
node
[
id 7
]
node
[
id 8
]
node
[
id 9
]
node
[
id 10
]
node
[
id 11
]
node
[
id 12
]
node
[
id 13
]
node
[
id 14
]
node
[
id 15
]
node
[
id 16
]
node
[
id 17
]
node
[
id 18
]
node
[
id 19
]
node
[
id 20
]
node
[
id 21
]
node
[
id 22
]
node
[
id 23
]
node
[
id 24
]
node
[
id 25
]
node
[
id 26
]
node
[
id 27
]
node
[
id 28
]
node
[
id 29
]
node
[
id 30
]
node
[
id 31
]
node
[
id 32
]
node
[
id 33
]
node
[
id 34
]
edge
[
source 2
target 1
]
edge
[
source 3
target 1
]
edge
[
source 3
target 2
]
edge
[
source 4
target 1
]
edge
[
source 4
target 2
]
edge
[
source 4
target 3
]
edge
[
source 5
target 1
]
edge
[
source 6
target 1
]
edge
[
source 7
target 1
]
edge
[
source 7
target 5
]
edge
[
source 7
target 6
]
edge
[
source 8
target 1
]
edge
[
source 8
target 2
]
edge
[
source 8
target 3
]
edge
[
source 8
target 4
]
edge
[
source 9
target 1
]
edge
[
source 9
target 3
]
edge
[
source 10
target 3
]
edge
[
source 11
target 1
]
edge
[
source 11
target 5
]
edge
[
source 11
target 6
]
edge
[
source 12
target 1
]
edge
[
source 13
target 1
]
edge
[
source 13
target 4
]
edge
[
source 14
target 1
]
edge
[
source 14
target 2
]
edge
[
source 14
target 3
]
edge
[
source 14
target 4
]
edge
[
source 17
target 6
]
edge
[
source 17
target 7
]
edge
[
source 18
target 1
]
edge
[
source 18
target 2
]
edge
[
source 20
target 1
]
edge
[
source 20
target 2
]
edge
[
source 22
target 1
]
edge
[
source 22
target 2
]
edge
[
source 26
target 24
]
edge
[
source 26
target 25
]
edge
[
source 28
target 3
]
edge
[
source 28
target 24
]
edge
[
source 28
target 25
]
edge
[
source 29
target 3
]
edge
[
source 30
target 24
]
edge
[
source 30
target 27
]
edge
[
source 31
target 2
]
edge
[
source 31
target 9
]
edge
[
source 32
target 1
]
edge
[
source 32
target 25
]
edge
[
source 32
target 26
]
edge
[
source 32
target 29
]
edge
[
source 33
target 3
]
edge
[
source 33
target 9
]
edge
[
source 33
target 15
]
edge
[
source 33
target 16
]
edge
[
source 33
target 19
]
edge
[
source 33
target 21
]
edge
[
source 33
target 23
]
edge
[
source 33
target 24
]
edge
[
source 33
target 30
]
edge
[
source 33
target 31
]
edge
[
source 33
target 32
]
edge
[
source 34
target 9
]
edge
[
source 34
target 10
]
edge
[
source 34
target 14
]
edge
[
source 34
target 15
]
edge
[
source 34
target 16
]
edge
[
source 34
target 19
]
edge
[
source 34
target 20
]
edge
[
source 34
target 21
]
edge
[
source 34
target 23
]
edge
[
source 34
target 24
]
edge
[
source 34
target 27
]
edge
[
source 34
target 28
]
edge
[
source 34
target 29
]
edge
[
source 34
target 30
]
edge
[
source 34
target 31
]
edge
[
source 34
target 32
]
edge
[
source 34
target 33
]
]
Raw
karate.json
{
"nodes":[
{},
{"id": 1},
{"id": 2},
{"id": 3},
{"id": 4},
{"id": 5},
{"id": 6},
{"id": 7},
{"id": 8},
{"id": 9},
{"id": 10},
{"id": 11},
{"id": 12},
{"id": 13},
{"id": 14},
{"id": 15},
{"id": 16},
{"id": 17},
{"id": 18},
{"id": 19},
{"id": 20},
{"id": 21},
{"id": 22},
{"id": 23},
{"id": 24},
{"id": 25},
{"id": 26},
{"id": 27},
{"id": 28},
{"id": 29},
{"id": 30},
{"id": 31},
{"id": 32},
{"id": 33},
{"id": 34}
],
"links":[
{"source": 2, "target": 1},
{"source": 3, "target": 1},
{"source": 3, "target": 2},
{"source": 4, "target": 1},
{"source": 4, "target": 2},
{"source": 4, "target": 3},
{"source": 5, "target": 1},
{"source": 6, "target": 1},
{"source": 7, "target": 1},
{"source": 7, "target": 5},
{"source": 7, "target": 6},
{"source": 8, "target": 1},
{"source": 8, "target": 2},
{"source": 8, "target": 3},
{"source": 8, "target": 4},
{"source": 9, "target": 1},
{"source": 9, "target": 3},
{"source": 10, "target": 3},
{"source": 11, "target": 1},
{"source": 11, "target": 5},
{"source": 11, "target": 6},
{"source": 12, "target": 1},
{"source": 13, "target": 1},
{"source": 13, "target": 4},
{"source": 14, "target": 1},
{"source": 14, "target": 2},
{"source": 14, "target": 3},
{"source": 14, "target": 4},
{"source": 17, "target": 6},
{"source": 17, "target": 7},
{"source": 18, "target": 1},
{"source": 18, "target": 2},
{"source": 20, "target": 1},
{"source": 20, "target": 2},
{"source": 22, "target": 1},
{"source": 22, "target": 2},
{"source": 26, "target": 24},
{"source": 26, "target": 25},
{"source": 28, "target": 3},
{"source": 28, "target": 24},
{"source": 28, "target": 25},
{"source": 29, "target": 3},
{"source": 30, "target": 24},
{"source": 30, "target": 27},
{"source": 31, "target": 2},
{"source": 31, "target": 9},
{"source": 32, "target": 1},
{"source": 32, "target": 25},
{"source": 32, "target": 26},
{"source": 32, "target": 29},
{"source": 33, "target": 3},
{"source": 33, "target": 9},
{"source": 33, "target": 15},
{"source": 33, "target": 16},
{"source": 33, "target": 19},
{"source": 33, "target": 21},
{"source": 33, "target": 23},
{"source": 33, "target": 24},
{"source": 33, "target": 30},
{"source": 33, "target": 31},
{"source": 33, "target": 32},
{"source": 34, "target": 9},
{"source": 34, "target": 10},
{"source": 34, "target": 14},
{"source": 34, "target": 15},
{"source": 34, "target": 16},
{"source": 34, "target": 19},
{"source": 34, "target": 20},
{"source": 34, "target": 21},
{"source": 34, "target": 23},
{"source": 34, "target": 24},
{"source": 34, "target": 27},
{"source": 34, "target": 28},
{"source": 34, "target": 29},
{"source": 34, "target": 30},
{"source": 34, "target": 31},
{"source": 34, "target": 32},
{"source": 34, "target": 33}
]
}
Raw
karate.txt
The file karate.gml contains the network of friendships between the 34
members of a karate club at a US university, as described by Wayne Zachary
in 1977. If you use these data in your work, please cite W. W. Zachary, An
information flow model for conflict and fission in small groups, Journal of
Anthropological Research 33, 452-473 (1977).
Raw
lesmis.gml
Creator "Mark Newman on Fri Jul 21 12:44:53 2006"
graph
[
node
[
id 0
label "Myriel"
]
node
[
id 1
label "Napoleon"
]
node
[
id 2
label "MlleBaptistine"
]
node
[
id 3
label "MmeMagloire"
]
node
[
id 4
label "CountessDeLo"
]
node
[
id 5
label "Geborand"
]
node
[
id 6
label "Champtercier"
]
node
[
id 7
label "Cravatte"
]
node
[
id 8
label "Count"
]
node
[
id 9
label "OldMan"
]
node
[
id 10
label "Labarre"
]
node
[
id 11
label "Valjean"
]
node
[
id 12
label "Marguerite"
]
node
[
id 13
label "MmeDeR"
]
node
[
id 14
label "Isabeau"
]
node
[
id 15
label "Gervais"
]
node
[
id 16
label "Tholomyes"
]
node
[
id 17
label "Listolier"
]
node
[
id 18
label "Fameuil"
]
node
[
id 19
label "Blacheville"
]
node
[
id 20
label "Favourite"
]
node
[
id 21
label "Dahlia"
]
node
[
id 22
label "Zephine"
]
node
[
id 23
label "Fantine"
]
node
[
id 24
label "MmeThenardier"
]
node
[
id 25
label "Thenardier"
]
node
[
id 26
label "Cosette"
]
node
[
id 27
label "Javert"
]
node
[
id 28
label "Fauchelevent"
]
node
[
id 29
label "Bamatabois"
]
node
[
id 30
label "Perpetue"
]
node
[
id 31
label "Simplice"
]
node
[
id 32
label "Scaufflaire"
]
node
[
id 33
label "Woman1"
]
node
[
id 34
label "Judge"
]
node
[
id 35
label "Champmathieu"
]
node
[
id 36
label "Brevet"
]
node
[
id 37
label "Chenildieu"
]
node
[
id 38
label "Cochepaille"
]
node
[
id 39
label "Pontmercy"
]
node
[
id 40
label "Boulatruelle"
]
node
[
id 41
label "Eponine"
]
node
[
id 42
label "Anzelma"
]
node
[
id 43
label "Woman2"
]
node
[
id 44
label "MotherInnocent"
]
node
[
id 45
label "Gribier"
]
node
[
id 46
label "Jondrette"
]
node
[
id 47
label "MmeBurgon"
]
node
[
id 48
label "Gavroche"
]
node
[
id 49
label "Gillenormand"
]
node
[
id 50
label "Magnon"
]
node
[
id 51
label "MlleGillenormand"
]
node
[
id 52
label "MmePontmercy"
]
node
[
id 53
label "MlleVaubois"
]
node
[
id 54
label "LtGillenormand"
]
node
[
id 55
label "Marius"
]
node
[
id 56
label "BaronessT"
]
node
[
id 57
label "Mabeuf"
]
node
[
id 58
label "Enjolras"
]
node
[
id 59
label "Combeferre"
]
node
[
id 60
label "Prouvaire"
]
node
[
id 61
label "Feuilly"
]
node
[
id 62
label "Courfeyrac"
]
node
[
id 63
label "Bahorel"
]
node
[
id 64
label "Bossuet"
]
node
[
id 65
label "Joly"
]
node
[
id 66
label "Grantaire"
]
node
[
id 67
label "MotherPlutarch"
]
node
[
id 68
label "Gueulemer"
]
node
[
id 69
label "Babet"
]
node
[
id 70
label "Claquesous"
]
node
[
id 71
label "Montparnasse"
]
node
[
id 72
label "Toussaint"
]
node
[
id 73
label "Child1"
]
node
[
id 74
label "Child2"
]
node
[
id 75
label "Brujon"
]
node
[
id 76
label "MmeHucheloup"
]
edge
[
source 1
target 0
value 1
]
edge
[
source 2
target 0
value 8
]
edge
[
source 3
target 0
value 10
]
edge
[
source 3
target 2
value 6
]
edge
[
source 4
target 0
value 1
]
edge
[
source 5
target 0
value 1
]
edge
[
source 6
target 0
value 1
]
edge
[
source 7
target 0
value 1
]
edge
[
source 8
target 0
value 2
]
edge
[
source 9
target 0
value 1
]
edge
[
source 11
target 10
value 1
]
edge
[
source 11
target 3
value 3
]
edge
[
source 11
target 2
value 3
]
edge
[
source 11
target 0
value 5
]
edge
[
source 12
target 11
value 1
]
edge
[
source 13
target 11
value 1
]
edge
[
source 14
target 11
value 1
]
edge
[
source 15
target 11
value 1
]
edge
[
source 17
target 16
value 4
]
edge
[
source 18
target 16
value 4
]
edge
[
source 18
target 17
value 4
]
edge
[
source 19
target 16
value 4
]
edge
[
source 19
target 17
value 4
]
edge
[
source 19
target 18
value 4
]
edge
[
source 20
target 16
value 3
]
edge
[
source 20
target 17
value 3
]
edge
[
source 20
target 18
value 3
]
edge
[
source 20
target 19
value 4
]
edge
[
source 21
target 16
value 3
]
edge
[
source 21
target 17
value 3
]
edge
[
source 21
target 18
value 3
]
edge
[
source 21
target 19
value 3
]
edge
[
source 21
target 20
value 5
]
edge
[
source 22
target 16
value 3
]
edge
[
source 22
target 17
value 3
]
edge
[
source 22
target 18
value 3
]
edge
[
source 22
target 19
value 3
]
edge
[
source 22
target 20
value 4
]
edge
[
source 22
target 21
value 4
]
edge
[
source 23
target 16
value 3
]
edge
[
source 23
target 17
value 3
]
edge
[
source 23
target 18
value 3
]
edge
[
source 23
target 19
value 3
]
edge
[
source 23
target 20
value 4
]
edge
[
source 23
target 21
value 4
]
edge
[
source 23
target 22
value 4
]
edge
[
source 23
target 12
value 2
]
edge
[
source 23
target 11
value 9
]
edge
[
source 24
target 23
value 2
]
edge
[
source 24
target 11
value 7
]
edge
[
source 25
target 24
value 13
]
edge
[
source 25
target 23
value 1
]
edge
[
source 25
target 11
value 12
]
edge
[
source 26
target 24
value 4
]
edge
[
source 26
target 11
value 31
]
edge
[
source 26
target 16
value 1
]
edge
[
source 26
target 25
value 1
]
edge
[
source 27
target 11
value 17
]
edge
[
source 27
target 23
value 5
]
edge
[
source 27
target 25
value 5
]
edge
[
source 27
target 24
value 1
]
edge
[
source 27
target 26
value 1
]
edge
[
source 28
target 11
value 8
]
edge
[
source 28
target 27
value 1
]
edge
[
source 29
target 23
value 1
]
edge
[
source 29
target 27
value 1
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[
source 29
target 11
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[
source 30
target 23
value 1
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[
source 31
target 30
value 2
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[
source 31
target 11
value 3
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[
source 31
target 23
value 2
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[
source 31
target 27
value 1
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target 11
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target 11
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[
source 33
target 27
value 1
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[
source 34
target 11
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[
source 34
target 29
value 2
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edge
[
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target 11
value 3
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[
source 35
target 34
value 3
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edge
[
source 35
target 29
value 2
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[
source 36
target 34
value 2
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edge
[
source 36
target 35
value 2
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edge
[
source 36
target 11
value 2
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edge
[
source 36
target 29
value 1
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edge
[
source 37
target 34
value 2
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edge
[
source 37
target 35
value 2
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edge
[
source 37
target 36
value 2
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edge
[
source 37
target 11
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[
source 37
target 29
value 1
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[
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target 34
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[
source 38
target 35
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[
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target 36
value 2
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[
source 38
target 37
value 2
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edge
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target 11
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[
source 38
target 29
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[
source 39
target 25
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target 25
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[
source 41
target 24
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source 41
target 25
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[
source 42
target 41
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[
source 42
target 25
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target 24
value 1
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source 43
target 11
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edge
[
source 43
target 26
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[
source 43
target 27
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target 28
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[
source 44
target 11
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[
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target 28
value 2
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edge
[
source 47
target 46
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[
source 48
target 47
value 2
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edge
[
source 48
target 25
value 1
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edge
[
source 48
target 27
value 1
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[
source 48
target 11
value 1
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edge
[
source 49
target 26
value 3
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edge
[
source 49
target 11
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edge
[
source 50
target 49
value 1
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edge
[
source 50
target 24
value 1
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edge
[
source 51
target 49
value 9
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edge
[
source 51
target 26
value 2
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edge
[
source 51
target 11
value 2
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edge
[
source 52
target 51
value 1
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edge
[
source 52
target 39
value 1
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edge
[
source 53
target 51
value 1
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edge
[
source 54
target 51
value 2
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edge
[
source 54
target 49
value 1
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edge
[
source 54
target 26
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edge
[
source 55
target 51
value 6
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edge
[
source 55
target 49
value 12
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edge
[
source 55
target 39
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edge
[
source 55
target 54
value 1
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edge
[
source 55
target 26
value 21
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edge
[
source 55
target 11
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edge
[
source 55
target 16
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edge
[
source 55
target 25
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edge
[
source 55
target 41
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edge
[
source 55
target 48
value 4
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edge
[
source 56
target 49
value 1
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edge
[
source 56
target 55
value 1
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edge
[
source 57
target 55
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edge
[
source 57
target 41
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edge
[
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edge
[
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target 55
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edge
[
source 58
target 48
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[
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target 27
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[
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[
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target 11
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[
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[
source 59
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target 48
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[
source 60
target 58
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source 60
target 59
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edge
[
source 61
target 48
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[
source 61
target 58
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edge
[
source 61
target 60
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[
source 61
target 59
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[
source 61
target 57
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edge
[
source 61
target 55
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[
source 62
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[
source 62
target 58
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[
source 62
target 59
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[
source 62
target 48
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[
source 62
target 57
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[
source 62
target 41
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[
source 62
target 61
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[
source 62
target 60
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source 63
target 59
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[
source 63
target 48
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[
source 63
target 62
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[
source 63
target 57
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[
source 63
target 58
value 4
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[
source 63
target 61
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[
source 63
target 60
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source 63
target 55
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source 64
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source 64
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target 63
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target 60
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source 64
target 11
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source 65
target 63
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source 65
target 64
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[
source 65
target 48
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source 65
target 62
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[
source 65
target 58
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[
source 65
target 61
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[
source 65
target 60
value 2
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[
source 65
target 59
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edge
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source 65
target 57
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[
source 65
target 55
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[
source 66
target 64
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source 66
target 58
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source 66
target 59
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[
source 66
target 62
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edge
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source 66
target 65
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source 66
target 48
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[
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target 63
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target 61
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target 60
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target 57
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target 25
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source 68
target 11
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[
source 68
target 24
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edge
[
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target 27
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edge
[
source 68
target 48
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edge
[
source 68
target 41
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edge
[
source 69
target 25
value 6
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edge
[
source 69
target 68
value 6
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edge
[
source 69
target 11
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edge
[
source 69
target 24
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edge
[
source 69
target 27
value 2
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edge
[
source 69
target 48
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edge
[
source 69
target 41
value 1
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edge
[
source 70
target 25
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[
source 70
target 69
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edge
[
source 70
target 68
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edge
[
source 70
target 11
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target 24
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[
source 70
target 27
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edge
[
source 70
target 41
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edge
[
source 70
target 58
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edge
[
source 71
target 27
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edge
[
source 71
target 69
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edge
[
source 71
target 68
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edge
[
source 71
target 70
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edge
[
source 71
target 11
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edge
[
source 71
target 48
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edge
[
source 71
target 41
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[
source 71
target 25
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edge
[
source 72
target 26
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edge
[
source 72
target 27
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source 72
target 11
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[
source 73
target 48
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[
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target 48
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edge
[
source 74
target 73
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[
source 75
target 69
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edge
[
source 75
target 68
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edge
[
source 75
target 25
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edge
[
source 75
target 48
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edge
[
source 75
target 41
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edge
[
source 75
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edge
[
source 75
target 71
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edge
[
source 76
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edge
[
source 76
target 65
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[
source 76
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source 76
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edge
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source 76
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]
Raw
lesmis.json
{
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{"id":1,"label":"Napoleon"},
{"id":2,"label":"MlleBaptistine"},
{"id":3,"label":"MmeMagloire"},
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{"id":7,"label":"Cravatte"},
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{"id":16,"label":"Tholomyes"},
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{"id":44,"label":"MotherInnocent"},
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{"id":51,"label":"MlleGillenormand"},
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{"id":53,"label":"MlleVaubois"},
{"id":54,"label":"LtGillenormand"},
{"id":55,"label":"Marius"},
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{"id":72,"label":"Toussaint"},
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{"source":68,"target":27,"value":1},
{"source":68,"target":48,"value":1},
{"source":68,"target":41,"value":1},
{"source":69,"target":25,"value":6},
{"source":69,"target":68,"value":6},
{"source":69,"target":11,"value":1},
{"source":69,"target":24,"value":1},
{"source":69,"target":27,"value":2},
{"source":69,"target":48,"value":1},
{"source":69,"target":41,"value":1},
{"source":70,"target":25,"value":4},
{"source":70,"target":69,"value":4},
{"source":70,"target":68,"value":4},
{"source":70,"target":11,"value":1},
{"source":70,"target":24,"value":1},
{"source":70,"target":27,"value":1},
{"source":70,"target":41,"value":1},
{"source":70,"target":58,"value":1},
{"source":71,"target":27,"value":1},
{"source":71,"target":69,"value":2},
{"source":71,"target":68,"value":2},
{"source":71,"target":70,"value":2},
{"source":71,"target":11,"value":1},
{"source":71,"target":48,"value":1},
{"source":71,"target":41,"value":1},
{"source":71,"target":25,"value":1},
{"source":72,"target":26,"value":2},
{"source":72,"target":27,"value":1},
{"source":72,"target":11,"value":1},
{"source":73,"target":48,"value":2},
{"source":74,"target":48,"value":2},
{"source":74,"target":73,"value":3},
{"source":75,"target":69,"value":3},
{"source":75,"target":68,"value":3},
{"source":75,"target":25,"value":3},
{"source":75,"target":48,"value":1},
{"source":75,"target":41,"value":1},
{"source":75,"target":70,"value":1},
{"source":75,"target":71,"value":1},
{"source":76,"target":64,"value":1},
{"source":76,"target":65,"value":1},
{"source":76,"target":66,"value":1},
{"source":76,"target":63,"value":1},
{"source":76,"target":62,"value":1},
{"source":76,"target":48,"value":1},
{"source":76,"target":58,"value":1}
]
}
Raw
lesmis.txt
The file lesmis.gml contains the weighted network of coappearances of
characters in Victor Hugo's novel "Les Miserables". Nodes represent
characters as indicated by the labels and edges connect any pair of
characters that appear in the same chapter of the book. The values on the
edges are the number of such coappearances. The data on coappearances were
taken from D. E. Knuth, The Stanford GraphBase: A Platform for
Combinatorial Computing, Addison-Wesley, Reading, MA (1993).
Raw
script.js
var width = 960,
height = 500,
radius = 6;
var force = d3.layout.force()
.gravity(.05)
.charge(-120)
.linkDistance(80)
.size([width, height]);
var header = d3.select("#graph").insert("h1")
.text("Title");
var svg = d3.select("#graph").append("svg")
.attr("width", width)
.attr("height", height);
function update() {
var color = d3.scale.category20();
header.text(filename);
force
.nodes(data.nodes)
.links(data.links)
.start();
var link = svg.selectAll(".link")
.data(data.links);
var node = svg.selectAll(".node")
.data(data.nodes);
node.exit().remove();
link.exit().remove();
link.enter().append("line")
.attr("class", "link")
.style("stroke-width", function(d) {
if ("value" in d) {
return Math.sqrt(d.value);
} else {
return 1;
}
});
var groups = node.enter()
.append("g")
.attr("class", "node");
groups.append("circle").attr("r", function(d) {
if ("id" in d) { return 5; }
else { return 0; }
})
.style("fill", function(d) { return color(d.value); })
.call(force.drag);
groups.append("text")
.attr("dx", 12)
.attr("dy", ".35em")
.text("hi");
node.selectAll("text")
.text(function(d) {
if ("label" in d) {
return d.label;
} else {
return d.id;
}
}
);
force.on("tick", function() {
link.attr("x1", function(d) {
return d.source.x;
})
.attr("y1", function(d) {
return d.source.y;
})
.attr("x2", function(d) {
return d.target.x;
})
.attr("y2", function(d) {
return d.target.y;
});
node.attr("cx", function(d) { return d.x = Math.max(radius, Math.min(width - radius, d.x)); })
.attr("cy", function(d) { return d.y = Math.max(radius, Math.min(height - radius, d.y)); });
node.attr("transform", function(d) { return "translate(" + d.x + "," + d.y + ")"; });
});
// EXIT
// Remove old elements as needed.
}
var data;
function clean_nodes(json) {
//I added an extra node to the karate dataset b/c the
//links started with index of 1 instead of 0
if (!('id' in json.nodes[0])) {
json.nodes = json.nodes.slice(1);
json.links.forEach(function (d){
d.source = d.source - 1;
d.target = d.target - 1;
})
}
// if ("value" in json.nodes[0]){
// json.nodes = json.nodes.sort(function(a, b) { return a.value - b.value; });
// }
return json;
}
function read_json(fn){
//Brute force clear data before reading next file
data = {"nodes": [], "links": []};
update();
d3.json(fn, function(error, json) {
if (error) {
throw error;
}
filename = fn;
data = clean_nodes(json);
update();
});
}
var filename = "lesmis.json";
read_json(filename)
Raw
script_radial.js
var header = d3.select("#circle").insert("h1")
.text("Title");
var diameter = 500,
radius = diameter / 2,
margin = 20,
graph,
filename = "lesmis.json";
// Generates a tooltip for a SVG circle element based on its ID
function addTooltip(circle) {
var x = parseFloat(circle.attr("cx"));
var y = parseFloat(circle.attr("cy"));
var r = parseFloat(circle.attr("r"));
var text = circle.attr("id");
var tooltip = d3.select("#plot")
.append("text")
.text(text)
.attr("x", x)
.attr("y", y)
.attr("dy", -r * 2)
.attr("id", "tooltip");
var offset = tooltip.node().getBBox().width / 2 + 100;
if ((x - offset) < -radius) {
tooltip.attr("text-anchor", "start");
tooltip.attr("dx", -r);
}
else if ((x + offset) > (radius)) {
tooltip.attr("text-anchor", "end");
tooltip.attr("dx", r);
}
else {
tooltip.attr("text-anchor", "middle");
tooltip.attr("dx", 0);
}
}
var svg = d3.select("body").select("#circle")
.append("svg")
.attr("width", diameter + 200)
.attr("height", diameter + 200);
svg.append("g")
.attr("id", "plot")
.attr("transform", "translate(" + (radius + 100) + ", " + (radius + 100) + ")");
// Draws an arc diagram for the provided undirected graph
function drawGraph() {
// create svg image
header.text(filename);
graph.nodes.forEach(function(d, i) {
if ("label" in d) {
graph.nodes[i].name = d.label;
} else {
graph.nodes[i].name = d.id;
}
});
// console.log(graph);
// fix graph links to map to objects instead of indices
graph.links.forEach(function(d, i) {
d.source = isNaN(d.source) ? d.source : graph.nodes[d.source];
d.target = isNaN(d.target) ? d.target : graph.nodes[d.target];
});
// calculate node positions
circleLayout(graph.nodes);
// draw edges first
drawLinks(graph.links);
// drawCurves(graph.links);
// draw nodes last
drawNodes(graph.nodes);
}
// Calculates node locations
function circleLayout(nodes) {
// use to scale node index to theta value
var scale = d3.scale.linear()
.domain([0, nodes.length])
.range([0, 2 * Math.PI]);
// calculate theta for each node
nodes.forEach(function(d, i) {
// calculate polar coordinates
var theta = scale(i);
var radial = radius - margin;
// convert to cartesian coordinates
d.x = radial * Math.sin(theta);
d.x1 = (10+radial) * Math.sin(theta);
d.y = radial * Math.cos(theta);
d.y1 = (10+radial) * Math.cos(theta);
});
}
// Draws nodes with tooltips
function drawNodes(nodes) {
// used to assign nodes color by group
var color = d3.scale.category20();
var nodeData = d3.select("#plot").selectAll(".node")
.data(nodes);
var nodeGroups = nodeData
.enter()
.append("g")
.attr("class", "node");
nodeGroups.append("text")
.attr("class", "rtext")
.attr("x", function(d) { return d.x1; })
.attr("y", function(d) { return d.y1; })
.attr("text-anchor", function(d) { return d.x < 0 ? "end" : "start"; })
.attr("transform", function(d) {
if ( d.x < 0 ) {
return "rotate(" + -d.y1 / 3.14 + ", " + d.x1 + "," + d.y1 + ")";
} else {
return "rotate(" + d.y1 / 3.14 + ", " + d.x1 + "," + d.y1 + ")";
}
})
.text(function(d) { return d.name; });
nodeGroups
.append("circle")
.attr("id", function(d) { return d.name; })
.attr("cx", function(d) { return d.x; })
.attr("cy", function(d) { return d.y; })
.attr("r", 5)
.style("fill", function(d) { return color(d.value); })
.on("mouseover", function() { addTooltip(d3.select(this)); })
.on("mouseout", function() { d3.select("#tooltip").remove(); });
nodeData.exit().remove();
}
// Draws straight edges between nodes
function drawLinks(links) {
var linkData = d3.select("#plot").selectAll(".link")
.data(links);
linkData
.enter()
.append("line")
.attr("class", "link")
.attr("x1", function(d) { return d.source.x; })
.attr("y1", function(d) { return d.source.y; })
.attr("x2", function(d) { return d.target.x; })
.attr("y2", function(d) { return d.target.y; });
linkData.exit().remove();
}
// Draws curved edges between nodes
function drawCurves(links) {
// remember this from tree example?
var curve = d3.svg.diagonal()
.projection(function(d) { return [d.x, d.y]; });
d3.select("#plot").selectAll(".link")
.data(links)
.enter()
.append("path")
.attr("class", "link")
.attr("d", curve);
}
function clean_nodes(json) {
//I added an extra node to the karate dataset b/c the
//links started with index of 1 instead of 0
var data = json;
if (!("id" in json.nodes[0])) {
data.nodes = json.nodes.slice(1);
data.links.forEach(function (d){
d.source = d.source - 1;
d.target = d.target - 1;
});
}
// if ("value" in json.nodes[0]){
// json.nodes = json.nodes.sort(function(a, b) { return b.value - a.value; });
// }
return data;
}
function read_json(fn){
//Brute force clear data before reading next file
graph = {"nodes": [], "links": []};
drawGraph();
d3.json(fn, function(error, json) {
if (error) {
throw error;
}
filename = fn;
graph = clean_nodes(json);
drawGraph();
});
}
read_json(filename);
Raw
style.css
body {
font-family: 'Source Sans Pro', sans-serif;
}
b {
font-weight: 900;
}
#tooltip {
font-size: 14pt;
font-weight: 900;
fill: #000000;
stroke: #ffffff;
stroke-width: 0.25px;
}
.node {
stroke: #ffffff;
stroke-weight: 1px;
}
.rtext {
font-size: 10pt;
stroke: #aaa;
stroke-weight: 0px;
}
.link {
fill: none;
stroke: #888888;
stroke-weight: 1px;
stroke-opacity: 0.5;
}
.highlight {
stroke: red;
stroke-weight: 4px;
stroke-opacity: 1.0;
}
.button {
width: 200px;
margin: 1em;
}
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