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Last active May 28, 2020 15:35
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omero docker compose
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README.md
Raw
docker-compose.yml
version: "3.1"
services:
db:
image: postgres
environment:
POSTGRES_USER: ${DBUSER}
POSTGRES_PASSWORD: ${DBPASSWD}
networks:
- omero-net
volumes:
- "db:/var/lib/postgresql/data"
ports:
- "5432:5432"
omero-server:
image: openmicroscopy/omero-server:5.5
depends_on:
- db
environment:
CONFIG_omero_db_user: ${DBUSER}
CONFIG_omero_db_pass: ${DBPASSWD}
CONFIG_omero_db_name: ${DBNAME}
ROOTPASS: ${ROOTPASSWD}
networks:
- omero-net
volumes:
- "data:/OMERO"
ports:
- "4063:4063"
- "4064:4064"
omero-web:
image: openmicroscopy/omero-web-standalone:5.5
depends_on:
- omero-server
environment:
CONFIG_omero_web_server__list: '[["${OMERO_SERVER}",4064,"omero"]]'
CONFIG_omero_web_debug: 'true'
CONFIG_omero_web_public_enabled: 'True'
CONFIG_omero_web_public_user: ${OMERO_PUB_USER}
CONFIG_omero_web_public_password: ${OMERO_PUB_PASSWD}
CONFIG_omero_web_public_url__filter: '^/(webadmin/myphoto/|webclient/(?!(script_ui|ome_tiff|figure_script))|webgateway/(?!(archived_files|download_as)))'
CONFIG_omero_web_public_server__id: 1
ports:
- "8090:4080"
omero-cnb:
image: nimezhu/cnb-index-omero:latest
environment:
CONFIG_omero_db_name: ${DBNAME}
CONFIG_omero_db_pass: ${DBPASSWD}
CONFIG_omero_db_user: ${DBUSER}
CONFIG_omero_web_server: "http://${OMERO_SERVER}:8090"
depends_on:
- omero-web
networks:
- omero-net
networks:
omero-net:
volumes:
data:
db:
Raw
env.sh
DBNAME="postgres"
DBUSER="postgres"
DBPASSWD="dbpassword"
ROOTPASSWD="rootpassword"
OMERO_SERVER="website"
OMERO_PUB_USER="publicuser"
OMERO_PUB_PASSWD="publicpassword"
export DBNAME DBUSER DBPASSWD ROOTPASSWD OMERO_SERVER OMERO_PUB_USER OMERO_PUB_PASSWD
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