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HyPhy Batch Language - Vim Syntax File
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| " Vim syntax file | |
| " Language: HyPhy Batch Language | |
| " Maintainer: Steven Weaver <steven@stevenweaver.org> | |
| " Last Change: 2016 Apr 13 | |
| " For version 5.x: Clear all syntax items | |
| " For version 6.x: Quit when a syntax file was already loaded | |
| if version < 600 | |
| syntax clear | |
| elseif exists("b:current_syntax") | |
| finish | |
| endif | |
| " Read the C syntax to start with | |
| if version < 600 | |
| so <sfile>:p:h/cpp.vim | |
| else | |
| runtime! syntax/cpp.vim | |
| endif | |
| syn keyword hyphyBuiltin Abs Arctan Beta BranchCount BranchLength BranchName | |
| syn keyword hyphyBuiltin CChi2 CGammaDist Columns Cos Eigensystem Erf Eval Exp | |
| syn keyword hyphyBuiltin Format Gamma GammaDist IBeta IGamma InvChi2 Inverse | |
| syn keyword hyphyBuiltin Join LnGamma Log LUDecompose LUSolve Max Min PSTreeString | |
| syn keyword hyphyBuiltin Random RerootTree Rows Simplex Sin Sqrt Tan Time | |
| syn keyword hyphyBuiltin TipCount TipName Transpose Type ZCDF | |
| syn keyword HBLCommand AlignSequences Assert BGM | |
| syn keyword HBLCommand Category ChoiceList ClearConstraints | |
| syn keyword HBLCommand ConstructCategoryMatrix CovarianceMatrix | |
| syn keyword HBLCommand DataSet DataSetFilter DeleteObject Differentiate DoSQL | |
| syn keyword HBLCommand ExecuteAFile ExecuteCommands Export Ffunction FindRoot | |
| syn keyword HBLCommand fprintf fscanf function GetDataInfo GetInformation GetNeutralNull | |
| syn keyword HBLCommand GetString GetURL HarvestFrequencies Import Integrate LFCompute | |
| syn keyword HBLCommand LikelihoodFunction LikelihoodFunction3 LoadFunctionLibrary Model | |
| syn keyword HBLCommand MolecularClock MPIReceive MPISend OpenDataPanel OpenWindow | |
| syn keyword HBLCommand Optimize ReplicateConstraint RequireVersion SCFG | |
| syn keyword HBLCommand SelectTemplateModel SetDialogPrompt SetParameter SimulateDataSet | |
| syn keyword HBLCommand SpawnLikelihoodFunction StateCounter UseModel | |
| syn match hyphyFunction | |
| \ "\%(\%(function\s\|function\s\|@\)\s*\)\@<=\h\%(\w\|>\)*" contained | |
| hi def link hyphyBuiltin Statement | |
| hi def link HBLCommand Statement | |
| hi def link hyphyFunction Function |
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@spond Please use this syntax file for hyphy batch files when using vim