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sxv/combine_raw_reads.py

Created November 18, 2017 08:30
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take ENS gene id and gene name and append col[2:] from input files
Raw
combine_raw_reads.py
import sys
rows = []
for line in open('gene_names.csv'):
a,b,c = line.replace('\n','').split(',')
rows.append([a,c])
for file in sys.argv[1:]:
for i, line in enumerate(open(file)):
rows[i] += line.replace('\n','').split(',')[2:]
for row in rows:
print ','.join(row)
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