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tayabsoomro / Chaos_Theory_Visualization.ipynb
Last active April 13, 2020 05:46
Experimenting with Chaos Theory and Visualizing logistic map (Source: https://ipython-books.github.io/121-plotting-the-bifurcation-diagram-of-a-chaotic-dynamical-system/)
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tayabsoomro / ShortListArabidopsisPeptides.sh
Last active January 19, 2020 05:21
Shell Script for creating a shortlist of phosphopeptides of Arabidopsis
#!/bin/sh
#####################################################################
# SYNOPSIS
# The following script was used for the shortlist of
# the peptides sent for Arabidopsis-specific array
# synthesis
#
# DAPPLE2 Configruation
# Target Organism : {ANY}
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tayabsoomro / samtocsv.sh
Last active July 8, 2019 20:45
Generates a CSV file containing useful data about alignment from SAM file
#!/usr/bin/bash
SAM=/isilon/saskatoon-rdc/users/soomrot/genome_comparison/minimap2/run4_pbpt3.sorted.bam
TOTAL_GAP_BP=0
prev_end_ref=-404
prev_end_query=-404
prev_old_contig_name=""
PATH_TO_NEW_CONTIG_FILE=/isilon/saskatoon-rdc/users/soomrot/data/OX1905abc/OX1905-Assembly/run4/all_contigs.fasta
PATH_TO_FASTA=/home/AAFC-AAC/soomrot/software
PATH_TO_PBPT3=/isilon/saskatoon-rdc/users/soomrot/genome_comparison/nucmer_run/pbpt3.fasta
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tayabsoomro / BINF_COMMANDS.md
Last active December 20, 2023 05:13
Useful UNIX commands for my bioinformatics work