- Homebrew
- Ruby https://www.ruby-lang.org/en/
- Octave https://www.gnu.org/software/octave/
- MacVim http://www.vim.org/
- Python https://www.python.org/
- Python3 https://www.python.org/
- pip
- jupyter
- pygments
- numpy
- scipy
- matplotlib
- pandas
- pymc3
- cython
- pillow
- opencv
- plotly.js
- CMake: https://cmake.org
- valgrind: http://valgrind.org
- Imagemagick: https://www.imagemagick.org/script/index.php
- hdf5: https://support.hdfgroup.org/HDF5/
- QGIS http://qgis.org/en/site/
- VirtualBox https://www.virtualbox.org/
- OpenCV + Python http://opencv.org/
- Intel MKL, IPP, TBB, and DAAL via free community licenses https://software.intel.com/en-us/articles/free-mkl
- Julia https://julialang.org/
- XQuartz https://www.xquartz.org/
- Gimp https://www.gimp.org/
- f.lux https://justgetflux.com/
- iTerm2 https://iterm2.com/
- Atom https://atom.io/
- Matlab if available https://www.mathworks.com/products/matlab.html
- Oh My Zsh http://ohmyz.sh/
- XCode https://developer.apple.com/xcode/
- Inkscape https://inkscape.org/en/
- Chrome https://www.google.com/chrome/browser/desktop/index.html
- Firefox https://www.mozilla.org/en-US/firefox/new/
- Node.js https://nodejs.org/en/
- Docker for Mac https://docs.docker.com/docker-for-mac/install/
- Wireshark https://www.wireshark.org/
- VLC http://www.videolan.org/vlc/
- R https://www.r-project.org/
- Handbrake https://handbrake.fr/
- ffmpeg http://ffmpeg.org/
- MacTeX full https://www.tug.org/mactex/
- JabRef http://www.jabref.org/
- Pandoc http://pandoc.org/
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