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jodyphelan/TB-Profiler-Dev

Last active March 7, 2024 15:14
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TB-Profiler-Dev
wget https://raw.githubusercontent.com/jodyphelan/TBProfiler/dev/conda/linux-latest.txt
conda create --name tb-profiler-dev --file linux-latest.txt
conda activate tb-profiler-dev
pip install --force-reinstall git+https://github.com/jodyphelan/pathogen-profiler.git@dev
pip install --force-reinstall git+https://github.com/jodyphelan/TBProfiler.git@dev
# If you want to use a custom refrence
tb-profiler update_tbdb --match_ref ~/refgenome/NC000962.3.fa --branch test
# If you want to install ntm-profiler
pip install --force-reinstall git+https://github.com/jodyphelan/ntm-profiler.git@dev
ntm-profiler update_db
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