Created
February 7, 2024 13:11
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conda activate tb-profiler-dev | |
pip install --force-reinstall git+https://github.com/jodyphelan/pathogen-profiler.git@dev | |
pip install --force-reinstall git+https://github.com/jodyphelan/TBProfiler.git@dev | |
git clone https://github.com/jodyphelan/tbdb.git | |
cd tbdb | |
# move the parsed_who_mutations.csv and genes.csv to the current directory | |
# cp ~/temp/parsed_who_mutations.csv . | |
# cp ~/temp/genes.csv . | |
tb-profiler create_db --csv parsed_who_mutations.csv --watchlist genes.csv |
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