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jodyphelan/parse mutations

Created February 7, 2024 13:11
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parse mutations
conda activate tb-profiler-dev
pip install --force-reinstall git+https://github.com/jodyphelan/pathogen-profiler.git@dev
pip install --force-reinstall git+https://github.com/jodyphelan/TBProfiler.git@dev
git clone https://github.com/jodyphelan/tbdb.git
cd tbdb
# move the parsed_who_mutations.csv and genes.csv to the current directory
# cp ~/temp/parsed_who_mutations.csv .
# cp ~/temp/genes.csv .
tb-profiler create_db --csv parsed_who_mutations.csv --watchlist genes.csv
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