g3-lollipop.js: visualize genetic mutations using an interactive lollipop diagram.
Read more at g3-lollipop.js or g3viz (R interface).
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April 9, 2019 17:12
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g3-lollipop.js: Interactively visualize genetic mutations using a lollipop-diagram
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| license: MIT | |
| height: 520 | |
| border: yes |
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| <!DOCTYPE html> | |
| <html> | |
| <head> | |
| <meta charset="utf-8"> | |
| <meta http-equiv="X-UA-Compatible" content="IE=edge"> | |
| <link rel="stylesheet" href="https://s3-us-west-2.amazonaws.com/cdsjsd3/g3-viz/0.5.0/g3-lollipop.min.css"> | |
| <link rel="stylesheet" href="https://s3-us-west-2.amazonaws.com/cdsjsd3/css/gist.css"> | |
| </head> | |
| <body> | |
| <div> | |
| <div> | |
| <span class="btn-group"> | |
| <button id="save-as-png">save as PNG</button> | |
| <button id="save-as-svg">save as SVG</button> | |
| </span> | |
| </div> | |
| <div id="lollipop"></div> | |
| </div> | |
| <script src="https://d3js.org/d3.v4.min.js"></script> | |
| <script src="https://s3-us-west-2.amazonaws.com/cdsjsd3/g3-viz/0.5.0/g3-lollipop.min.js"></script> | |
| <script src="https://s3-us-west-2.amazonaws.com/cdsjsd3/data/TCGA-BRCA-varscan-somatic-PIK3CA-trimmed.js"></script> | |
| <script> | |
| // new lollipop chart | |
| var lollipop = g3.Lollipop("lollipop"); | |
| // add data | |
| lollipop.data.snvData = mutationData; | |
| lollipop.data.domainData = domainData; | |
| // add data options | |
| lollipop.format.snvData = mutationDataFormat; | |
| lollipop.format.domainData = domainDataFormat; | |
| // add chart options | |
| lollipop.setOptions(plotOptions); | |
| // draw | |
| lollipop.draw(); | |
| // get chart div id | |
| var chartID = lollipop.options.chartID; | |
| // set default filename | |
| var output_chart_filename = "lollipop"; | |
| // button actions: download chart | |
| document.getElementById("save-as-png").onclick = function (e) { | |
| g3.output().toPNG(output_chart_filename, chartID); | |
| }; | |
| document.getElementById("save-as-svg").onclick = function (e) { | |
| g3.output().toSVG(output_chart_filename, chartID); | |
| }; | |
| </script> | |
| </body> | |
| </html> |
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