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EndSeqCircos
Raw
README.md

EndSeq Circos Plot

Plot showing the number of reads per bin over the entire mm10 genome of an EndSeq experimental sample compared to wildtype

Raw
index.html
<!DOCTYPE html>
<html>
<head>
<meta charset="utf-8">
<script src="https://d3js.org/d3.v4.min.js"></script>
<style>
#chart {
position: fixed;
left: 0px;
right: 0px;
top: 0px;
bottom: 0px;
z-index: -2;
height: 100%;
}
body {
font-family: sans-serif
}
</style>
</head>
<body>
<div id="chart">
</div>
<script>
var chartDiv = document.getElementById("chart");
var width = chartDiv.clientWidth -20;
var height = chartDiv.clientHeight -20;
var x = d3.scaleLinear().range([0,width]).domain([0,1000])
var y = d3.scaleLinear().range([0,height]).domain([0,1000])
var mm10chr = ['chr1','chr2','chr3','chr4','chr5','chr6','chr7','chr8','chr9','chr10','chr11','chr12','chr13','chr14','chr15','chr16','chr17','chr18','chr19','chrX','chrY','chrP','chrR']
var scale = d3.scaleLinear().range([0,height]).domain([0,1000])
var RAGangle = 6.14896100996
var PPOIangle = 1.86584034217
var svg = d3.select("body").append("svg")
.attr("width", width)
.attr("height", height)
var DrawCircos = function(input,xloc,yloc,baitAngle,chrInner,chrOuter,binSize,eventThresh,histogramMultiplier){
//parameters:
//input - input file
//xloc, yloc - x and y location of center of circos
//baitAngle - angle where chords will start
//chrInner, chrOuter - inner radius and outer radius of chr band
//binSize - siez of bin for histogram
//eventThresh - threshold number for each bin in which to draw chord to
//histogramMultiplier - flat multiplier to histogram values
var pie = d3.pie()
.sort(null)
.padAngle(0.01)
.value(function(d) { return d.length; })
.startAngle(0.1)
.endAngle(6.18);
var donut = svg.append("g")
.attr("transform", "translate(" + x(xloc) + "," + y(yloc) + ")")
.attr('class','donut')
// function to generate initial circle
var buildDonut = function(input, callback){
d3.tsv(input, function(error,data){
if (error) throw error;
var pieArray = pie(data);
var g = donut.selectAll(".arc_chr")
.data(pieArray)
.enter().append("g")
.attr("class", "arc_chr")
g.select()
.data(pieArray)
.enter().append('text')
.text(function(d){return d.data.chr})
.attr('dx', function(d){
if(d.data.chr == "P"){
return scale(chrOuter * Math.cos(((d.startAngle + d.endAngle - Math.PI)/2))-3)
} else if (d.data.chr == "R") {
return scale(chrOuter * Math.cos(((d.startAngle + d.endAngle - Math.PI)/2))+5)
} else {
return scale(chrOuter * Math.cos(((d.startAngle + d.endAngle - Math.PI)/2)) - 2)
}
})
.attr('dy', function(d){
if(d.data.chr == "P"){
return scale(chrOuter * Math.sin(((d.startAngle + d.endAngle - Math.PI)/2)) + 5)
} else if (d.data.chr == "R") {
return scale(chrOuter * Math.sin(((d.startAngle + d.endAngle - Math.PI)/2)) + 3.5)
} else {
return scale(chrOuter * Math.sin(((d.startAngle + d.endAngle - Math.PI)/2)) + 5 )
}
})
.style('font-size',scale(20))
.style('fill','black')
.style("text-anchor", "middle")
/*
g.append("path")
.attr('d',d3.arc()
.outerRadius(scale(chrInner+15))
.innerRadius(scale(chrInner)))
.style('fill','#f7fbff')
*/
//callback to next in queue, return with pieArray
//draw circles scale
var drawScale = function(start,end,color){
donut.append('circle')
.attr('cx',0)
.attr('cy',0)
.attr('r', scale(chrInner) + scale(histogramMultiplier * end))
.style('fill', 'none')
.style('stroke','white');
donut.append('text')
.text(end)
.attr('dx', 0)
.attr('dy', -1 * (scale(chrInner) + scale(histogramMultiplier * end)) + scale(5))
.style('font-size',scale(15))
.style('fill','black')
.style("text-anchor", "middle")
g.append("path")
.attr('d',
d3.arc()
.outerRadius(scale(chrInner) + scale(histogramMultiplier * end))
.innerRadius(scale(chrInner) + scale(histogramMultiplier * start))
)
.style('fill',color)
}
drawScale(-500,-400,'#a50026')
drawScale(-400,-300,'#d73027')
drawScale(-300,-200,'#f46d43')
drawScale(-200,-100,'#fdae61')
drawScale(-100,0,'#fee090')
drawScale(0,100,'#e0f3f8')
drawScale(100,200,'#abd9e9')
drawScale(200,300,'#74add1')
drawScale(300,400,'#4575b4')
drawScale(400,500,'#313695')
/*
drawScale(0,5,'#f7fbff')
drawScale(5,20,'#deebf7')
drawScale(20,100,'#c6dbef')
drawScale(100,500,'#9ecae1')
drawScale(500,2500,'#6baed6')
drawScale(2500,12500,'#4292c6')
drawScale(12500,60000,'#2171b5')
drawScale(62500,300000,'#08519c')
*/
callback(null, pieArray)
})
}
var chord = d3.line()
.x(function(d) { return d.x; })
.y(function(d) { return d.y; })
.curve(d3.curveBasis)
/*
var arc_hist = d3.arc()
.outerRadius(function(d){
if(d.data == 0){
return scale(chrInner);
} else {
return scale(chrInner) + scale(histogramMultiplier * Math.log10(1000 * d.data + 1))
}
})
.innerRadius(scale(chrInner));
*/
var radial = d3.lineRadial()
.radius(function(d){
if(d.data.diff == 0){
return scale(chrInner);
} else {
return scale(chrInner) + scale(histogramMultiplier * d.data.diff)
}
})
.angle(function(d){return (d.startAngle + d.endAngle)/2})
.curve(d3.curveLinear)
//build donut, use angles to generate histograms
d3.queue()
.defer(buildDonut,"mm10prChrLen.txt")
.await(function(error, pieArray){
if (error) throw error;
//console.log(pieArray)
d3.tsv(input, function(error,data){
// for each chr, build bins, populate with events
console.log(pieArray)
for (var i in pieArray){
//console.log(data.length)
//console.log(pieArray[i].data.chr)
bins = data.filter(function(item){
return item.chromosome==pieArray[i].data.chr
})
//console.log(bins)
var histogram = d3.pie()
.sort(null)
.startAngle(pieArray[i].startAngle + 0.006)
.endAngle(pieArray[i].endAngle - 0.006)
.value(function(d) { return binSize });
var bin_hist = histogram(bins);
//console.log(pieArray[i].data)
console.log(bin_hist)
//draw historam
//console.log(donut)
var h = donut.append("path")
.attr('d',radial(bin_hist))
.attr('fill','none')
.attr('stroke','black')
.attr('stroke-width','1.01px')
.attr('opacity',0.8)
.attr("class","radial");
/*
donut.append("path")
.attr('d',radialBasis(bin_hist))
.attr('fill','none')
.attr('stroke','blue')
.attr('stroke-width','1.01px')
.attr('opacity',0.5)
.attr("class","radial")
*/
//console.log(radial(bin_hist))
/*
h.append("path")
.attr("d", radial)
.style("stroke","black");
*/
//console.log(bin_hist)
//get set of bins over threshold
var eventsOverThresh = bin_hist.filter(function(item){
return 1000 * item.data +1 >= eventThresh +1;
})
//draw curve to each bin over threshold
for(var i in eventsOverThresh){
var eventAngle = (eventsOverThresh[i].startAngle + eventsOverThresh[i].endAngle) / 2;
var curve = [
{
x: scale(chrInner) * Math.cos(baitAngle - Math.PI/2) + x(xloc),
y: scale(chrInner) * Math.sin(baitAngle - Math.PI/2) + y(yloc)
},
{
x: x(xloc),
y: y(yloc)
},
{
x: scale(chrInner) * Math.cos(eventAngle - Math.PI/2) + x(xloc),
y: scale(chrInner) * Math.sin(eventAngle - Math.PI/2) + y(yloc)
}
]
svg.append('path')
.attr('d', chord(curve))
.attr('fill', 'none')
.attr('stroke','black')
.attr('stroke-width','0.5px');
}
}
})
})
}
/*
//parameters:
//input - input file
//xloc, yloc - x and y location of center of circos
//baitAngle - angle where chords will start
//chrInner, chrOuter - inner radius and outer radius of chr band
//binSize - siez of bin for histogram
//eventThresh - threshold number for each bin in which to draw chord to
//histogramMultiplier - flat multiplier to histogram values
*/
DrawCircos("WT_EndSeq.bedgraph",500,500,PPOIangle,300,425,2500000,10,0.2)
</script>
</body>
</html>
Raw
mm10prChrLen.txt
chr length
chr1 195471971
chr2 182113224
chr3 160039680
chr4 156508116
chr5 151834684
chr6 149736546
chr7 145441459
chr8 129401213
chr9 124595110
chr10 130694993
chr11 122082543
chr12 120129022
chr13 120421639
chr14 124902244
chr15 104043685
chr16 98207768
chr17 94987271
chr18 90702639
chr19 61431566
chrX 171031299
chrY 91744698
Raw
WT_EndSeq.bedgraph
chromosome start end diff
chr1 0 2500000 0
chr1 2500000 5000000 -72.9554
chr1 5000000 7500000 -72.287
chr1 7500000 10000000 -47.367
chr1 10000000 12500000 -50.0662
chr1 12500000 15000000 17.6406
chr1 15000000 17500000 -6.63155
chr1 17500000 20000000 -31.2915
chr1 20000000 22500000 -3.54981
chr1 22500000 25000000 -32.2528
chr1 25000000 27500000 -31.9315
chr1 27500000 30000000 -36.937
chr1 30000000 32500000 -61.0824
chr1 32500000 35000000 23.0173
chr1 35000000 37500000 126.332
chr1 37500000 40000000 78.8364
chr1 40000000 42500000 17.6803
chr1 42500000 45000000 -30.6898
chr1 45000000 47500000 -50.7347
chr1 47500000 50000000 -56.3624
chr1 50000000 52500000 -6.93978
chr1 52500000 55000000 -30.8209
chr1 55000000 57500000 -41.6801
chr1 57500000 60000000 16.5723
chr1 60000000 62500000 -40.6323
chr1 62500000 65000000 -17.4015
chr1 65000000 67500000 -12.3892
chr1 67500000 70000000 -47.0319
chr1 70000000 72500000 -20.5355
chr1 72500000 75000000 50.9464
chr1 75000000 77500000 17.1212
chr1 77500000 80000000 -8.84315
chr1 80000000 82500000 -16.2845
chr1 82500000 85000000 2.08077
chr1 85000000 87500000 116.291
chr1 87500000 90000000 170.976
chr1 90000000 92500000 205.385
chr1 92500000 95000000 124.001
chr1 95000000 97500000 -43.0798
chr1 97500000 100000000 -38.7397
chr1 100000000 102500000 -47.0743
chr1 102500000 105000000 -50.6944
chr1 105000000 107500000 3.28562
chr1 107500000 110000000 -39.378
chr1 110000000 112500000 -71.0146
chr1 112500000 115000000 -38.9663
chr1 115000000 117500000 -22.8044
chr1 117500000 120000000 59.7126
chr1 120000000 122500000 52.3018
chr1 122500000 125000000 -30.8428
chr1 125000000 127500000 29.388
chr1 127500000 130000000 34.2562
chr1 130000000 132500000 45.1498
chr1 132500000 135000000 177.664
chr1 135000000 137500000 104.794
chr1 137500000 140000000 -47.5128
chr1 140000000 142500000 -75.5016
chr1 142500000 145000000 -50.4566
chr1 145000000 147500000 -38.8648
chr1 147500000 150000000 -74.0992
chr1 150000000 152500000 19.7614
chr1 152500000 155000000 102.574
chr1 155000000 157500000 55.359
chr1 157500000 160000000 52.9039
chr1 160000000 162500000 37.4208
chr1 162500000 165000000 40.2257
chr1 165000000 167500000 77.2518
chr1 167500000 170000000 50.0284
chr1 170000000 172500000 63.5505
chr1 172500000 175000000 28.8157
chr1 175000000 177500000 43.1111
chr1 177500000 180000000 39.8647
chr1 180000000 182500000 55.6017
chr1 182500000 185000000 68.8741
chr1 185000000 187500000 1.18001
chr1 187500000 190000000 -29.0908
chr1 190000000 192500000 -35.1772
chr1 192500000 195000000 -72.3333
chr10 0 2500000 0
chr10 2500000 5000000 -29.4043
chr10 5000000 7500000 -15.9015
chr10 7500000 10000000 28.3107
chr10 10000000 12500000 -20.6181
chr10 12500000 15000000 4.29095
chr10 15000000 17500000 -75.4064
chr10 17500000 20000000 17.3853
chr10 20000000 22500000 14.1266
chr10 22500000 25000000 -13.1883
chr10 25000000 27500000 16.2012
chr10 27500000 30000000 -73.8413
chr10 30000000 32500000 -35.5515
chr10 32500000 35000000 -76.0236
chr10 35000000 37500000 -38.1548
chr10 37500000 40000000 -35.5588
chr10 40000000 42500000 58.5768
chr10 42500000 45000000 2.63873
chr10 45000000 47500000 -53.0002
chr10 47500000 50000000 -71.1656
chr10 50000000 52500000 -67.9444
chr10 52500000 55000000 -51.1782
chr10 55000000 57500000 -116.473
chr10 57500000 60000000 -7.84501
chr10 60000000 62500000 270.933
chr10 62500000 65000000 -4.85728
chr10 65000000 67500000 -24.7496
chr10 67500000 70000000 32.3854
chr10 70000000 72500000 -29.8867
chr10 72500000 75000000 -38.9727
chr10 75000000 77500000 160.942
chr10 77500000 80000000 98.4288
chr10 80000000 82500000 19.049
chr10 82500000 85000000 72.4506
chr10 85000000 87500000 34.2076
chr10 87500000 90000000 -12.2053
chr10 90000000 92500000 -50.9838
chr10 92500000 95000000 37.6655
chr10 95000000 97500000 -13.021
chr10 97500000 100000000 -44.9888
chr10 100000000 102500000 -99.6259
chr10 102500000 105000000 -68.6687
chr10 105000000 107500000 -75.15
chr10 107500000 110000000 -49.4323
chr10 110000000 112500000 -20.6347
chr10 112500000 115000000 -88.5055
chr10 115000000 117500000 -18.0247
chr10 117500000 120000000 -12.7158
chr10 120000000 122500000 10.3362
chr10 122500000 125000000 -94.3779
chr10 125000000 127500000 -65.631
chr10 127500000 130000000 -65.8247
chr11 0 2500000 0
chr11 2500000 5000000 -27.8524
chr11 5000000 7500000 207.444
chr11 7500000 10000000 52.9504
chr11 10000000 12500000 -29.4842
chr11 12500000 15000000 -116.394
chr11 15000000 17500000 -62.9457
chr11 17500000 20000000 -39.0927
chr11 20000000 22500000 13.0785
chr11 22500000 25000000 37.7918
chr11 25000000 27500000 -66.493
chr11 27500000 30000000 -49.2769
chr11 30000000 32500000 57.6419
chr11 32500000 35000000 133.628
chr11 35000000 37500000 79.9293
chr11 37500000 40000000 -67.629
chr11 40000000 42500000 -58.6818
chr11 42500000 45000000 46.1993
chr11 45000000 47500000 53.4722
chr11 47500000 50000000 82.3474
chr11 50000000 52500000 147.784
chr11 52500000 55000000 149.446
chr11 55000000 57500000 130.753
chr11 57500000 60000000 166.06
chr11 60000000 62500000 172.398
chr11 62500000 65000000 4.85126
chr11 65000000 67500000 7.06023
chr11 67500000 70000000 75.7667
chr11 70000000 72500000 98.8423
chr11 72500000 75000000 43.5011
chr11 75000000 77500000 149.29
chr11 77500000 80000000 133.504
chr11 80000000 82500000 160.022
chr11 82500000 85000000 133.973
chr11 85000000 87500000 45.2312
chr11 87500000 90000000 150.435
chr11 90000000 92500000 -38.3741
chr11 92500000 95000000 40.7601
chr11 95000000 97500000 103.919
chr11 97500000 100000000 55.7637
chr11 100000000 102500000 142.646
chr11 102500000 105000000 142.208
chr11 105000000 107500000 70.0424
chr11 107500000 110000000 94.9157
chr11 110000000 112500000 -60.2463
chr11 112500000 115000000 121.794
chr11 115000000 117500000 88.0667
chr11 117500000 120000000 147.965
chr12 0 2500000 0
chr12 2500000 5000000 -19.984
chr12 5000000 7500000 3.71411
chr12 7500000 10000000 -9.73416
chr12 10000000 12500000 -33.8315
chr12 12500000 15000000 -1.43691
chr12 15000000 17500000 18.4012
chr12 17500000 20000000 88.8931
chr12 20000000 22500000 85.8818
chr12 22500000 25000000 62.1286
chr12 25000000 27500000 64.5688
chr12 27500000 30000000 109.387
chr12 30000000 32500000 25.2225
chr12 32500000 35000000 14.7916
chr12 35000000 37500000 -45.0715
chr12 37500000 40000000 -31.419
chr12 40000000 42500000 -32.5753
chr12 42500000 45000000 -75.2227
chr12 45000000 47500000 -55.3809
chr12 47500000 50000000 -60.1715
chr12 50000000 52500000 0.276458
chr12 52500000 55000000 20.2322
chr12 55000000 57500000 -24.0822
chr12 57500000 60000000 -34.024
chr12 60000000 62500000 -50.7994
chr12 62500000 65000000 -77.3491
chr12 65000000 67500000 -47.1908
chr12 67500000 70000000 -44.6828
chr12 70000000 72500000 20.1213
chr12 72500000 75000000 -17.5529
chr12 75000000 77500000 -1.85914
chr12 77500000 80000000 7.25172
chr12 80000000 82500000 74.8152
chr12 82500000 85000000 79.6186
chr12 85000000 87500000 137.157
chr12 87500000 90000000 -16.6288
chr12 90000000 92500000 -23.9423
chr12 92500000 95000000 -63.0987
chr12 95000000 97500000 -58.8534
chr12 97500000 100000000 23.9999
chr12 100000000 102500000 68.1516
chr12 102500000 105000000 154.781
chr12 105000000 107500000 112.733
chr12 107500000 110000000 106.586
chr12 110000000 112500000 171.145
chr12 112500000 115000000 107.605
chr12 115000000 117500000 -17.4715
chr12 117500000 120000000 -96.141
chr13 0 2500000 0
chr13 2500000 5000000 -8.88327
chr13 5000000 7500000 -46.9421
chr13 7500000 10000000 29.1294
chr13 10000000 12500000 18.9826
chr13 12500000 15000000 -26.7663
chr13 15000000 17500000 -23.6135
chr13 17500000 20000000 -32.4295
chr13 20000000 22500000 -1.71112
chr13 22500000 25000000 -7.36326
chr13 25000000 27500000 -75.1205
chr13 27500000 30000000 -25.8649
chr13 30000000 32500000 48.4696
chr13 32500000 35000000 7.9492
chr13 35000000 37500000 20.6498
chr13 37500000 40000000 28.7826
chr13 40000000 42500000 37.6959
chr13 42500000 45000000 69.9591
chr13 45000000 47500000 70.9661
chr13 47500000 50000000 114.223
chr13 50000000 52500000 176.522
chr13 52500000 55000000 192.013
chr13 55000000 57500000 163.877
chr13 57500000 60000000 123.393
chr13 60000000 62500000 38.4586
chr13 62500000 65000000 38.322
chr13 65000000 67500000 -31.7394
chr13 67500000 70000000 50.6852
chr13 70000000 72500000 84.8135
chr13 72500000 75000000 118.383
chr13 75000000 77500000 -17.6862
chr13 77500000 80000000 -41.7548
chr13 80000000 82500000 -10.4011
chr13 82500000 85000000 -77.678
chr13 85000000 87500000 -33.5625
chr13 87500000 90000000 -46.0645
chr13 90000000 92500000 49.3602
chr13 92500000 95000000 33.273
chr13 95000000 97500000 46.3241
chr13 97500000 100000000 44.227
chr13 100000000 102500000 5.15812
chr13 102500000 105000000 4.95173
chr13 105000000 107500000 -37.5609
chr13 107500000 110000000 -29.4041
chr13 110000000 112500000 -56.1935
chr13 112500000 115000000 -54.1757
chr13 115000000 117500000 -110.636
chr13 117500000 120000000 -134.012
chr14 0 2500000 0
chr14 2500000 5000000 -105.82
chr14 5000000 7500000 -140.365
chr14 7500000 10000000 5.07594
chr14 10000000 12500000 -12.1304
chr14 12500000 15000000 -54.0438
chr14 15000000 17500000 -37.65
chr14 17500000 20000000 -198.626
chr14 20000000 22500000 74.588
chr14 22500000 25000000 133.679
chr14 25000000 27500000 160.574
chr14 27500000 30000000 82.1182
chr14 30000000 32500000 184.271
chr14 32500000 35000000 172.271
chr14 35000000 37500000 58.115
chr14 37500000 40000000 -45.3705
chr14 40000000 42500000 -22.5941
chr14 42500000 45000000 -35.4968
chr14 45000000 47500000 19.2357
chr14 47500000 50000000 -0.0412898
chr14 50000000 52500000 -27.6925
chr14 52500000 55000000 -19.4033
chr14 55000000 57500000 48.0315
chr14 57500000 60000000 25.9043
chr14 60000000 62500000 46.9036
chr14 62500000 65000000 119.159
chr14 65000000 67500000 112.802
chr14 67500000 70000000 58.6876
chr14 70000000 72500000 96.965
chr14 72500000 75000000 15.5146
chr14 75000000 77500000 68.7025
chr14 77500000 80000000 23.6799
chr14 80000000 82500000 -18.0117
chr14 82500000 85000000 -81.25
chr14 85000000 87500000 -61.8279
chr14 87500000 90000000 -48.8021
chr14 90000000 92500000 -50.4806
chr14 92500000 95000000 -103.424
chr14 95000000 97500000 -34.9874
chr14 97500000 100000000 -45.796
chr14 100000000 102500000 -23.3025
chr14 102500000 105000000 -28.8136
chr14 105000000 107500000 -42.5813
chr14 107500000 110000000 -61.1549
chr14 110000000 112500000 -92.2062
chr14 112500000 115000000 -131.457
chr14 115000000 117500000 -154.348
chr14 117500000 120000000 -102.933
chr14 120000000 124902244 -24.1789
chr15 0 2500000 0
chr15 2500000 5000000 -56.5976
chr15 5000000 7500000 -3.23085
chr15 7500000 10000000 -11.2522
chr15 10000000 12500000 18.891
chr15 12500000 15000000 -19.3357
chr15 15000000 17500000 -70.3144
chr15 17500000 20000000 -36.5227
chr15 20000000 22500000 -32.7932
chr15 22500000 25000000 -45.6382
chr15 25000000 27500000 0.800148
chr15 27500000 30000000 27.4099
chr15 30000000 32500000 40.5136
chr15 32500000 35000000 31.113
chr15 35000000 37500000 87.1328
chr15 37500000 40000000 48.3958
chr15 40000000 42500000 -11.809
chr15 42500000 45000000 -64.5198
chr15 45000000 47500000 -41.3692
chr15 47500000 50000000 -53.8073
chr15 50000000 52500000 -72.0735
chr15 52500000 55000000 -52.0288
chr15 55000000 57500000 -25.0767
chr15 57500000 60000000 95.0168
chr15 60000000 62500000 -22.0889
chr15 62500000 65000000 43.926
chr15 65000000 67500000 27.6202
chr15 67500000 70000000 -7.55252
chr15 70000000 72500000 -4.24125
chr15 72500000 75000000 166.421
chr15 75000000 77500000 119.027
chr15 77500000 80000000 212.242
chr15 80000000 82500000 134.453
chr15 82500000 85000000 231.32
chr15 85000000 87500000 213.565
chr15 87500000 90000000 139.607
chr15 90000000 92500000 -60.3439
chr15 92500000 95000000 -16.8044
chr15 95000000 97500000 -19.6286
chr15 97500000 100000000 -19.8107
chr15 100000000 104043685 -20.8119
chr16 0 2500000 0
chr16 2500000 5000000 53.2891
chr16 5000000 7500000 105.495
chr16 7500000 10000000 76.8444
chr16 10000000 12500000 128.238
chr16 12500000 15000000 26.9395
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chrX 92500000 95000000 -70.2732
chrX 95000000 97500000 -56.4253
chrX 97500000 100000000 -3.42328
chrX 100000000 102500000 7.88155
chrX 102500000 105000000 -24.3865
chrX 105000000 107500000 -64.416
chrX 107500000 110000000 -101.603
chrX 110000000 112500000 -120.238
chrX 112500000 115000000 -104.241
chrX 115000000 117500000 -66.6649
chrX 117500000 120000000 -86.8511
chrX 120000000 122500000 -67.7388
chrX 122500000 125000000 -49.0784
chrX 125000000 127500000 -49.7523
chrX 127500000 130000000 -60.4814
chrX 130000000 132500000 -62.2875
chrX 132500000 135000000 -49.3159
chrX 135000000 137500000 -30.8279
chrX 137500000 140000000 -89.1792
chrX 140000000 142500000 -42.3498
chrX 142500000 145000000 -59.9396
chrX 145000000 147500000 -100.502
chrX 147500000 150000000 -127.756
chrX 150000000 152500000 -19.1589
chrX 152500000 155000000 -63.3602
chrX 155000000 157500000 -75.302
chrX 157500000 160000000 -98.9099
chrX 160000000 162500000 -95.4342
chrX 162500000 165000000 -108.706
chrX 165000000 167500000 -143.9
chrX 167500000 170000000 -183.008
chrY 0 2500000 -5.62573
chrY 2500000 5000000 -11.6386
chrY 5000000 7500000 -5.15665
chrY 7500000 10000000 3.00027
chrY 10000000 12500000 1.76078
chrY 12500000 15000000 -3.5694
chrY 15000000 17500000 -2.12603
chrY 17500000 20000000 1.14592
chrY 20000000 22500000 -6.67119
chrY 22500000 25000000 -0.941828
chrY 25000000 27500000 -2.07794
chrY 27500000 30000000 0.292357
chrY 30000000 32500000 -5.73728
chrY 32500000 35000000 -5.14006
chrY 35000000 37500000 -2.88466
chrY 37500000 40000000 -1.46934
chrY 40000000 42500000 -7.81292
chrY 42500000 45000000 -9.4009
chrY 45000000 47500000 -5.78705
chrY 47500000 50000000 -2.12707
chrY 50000000 52500000 -1.73081
chrY 52500000 55000000 0.958222
chrY 55000000 57500000 1.1021
chrY 57500000 60000000 -3.54394
chrY 60000000 62500000 -5.74646
chrY 62500000 65000000 -0.81934
chrY 65000000 67500000 0.342956
chrY 67500000 70000000 1.48386
chrY 70000000 72500000 0.92838
chrY 72500000 75000000 0.0419493
chrY 75000000 77500000 -1.89389
chrY 77500000 80000000 0.374674
chrY 80000000 82500000 0.381666
chrY 82500000 85000000 -5.13224
chrY 85000000 87500000 -2.89279
chrY 87500000 90000000 -1.49334
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