Demo for made for Randomly https://rabadan.c2b2.columbia.edu/html/randomly/
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January 7, 2019 20:00
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Random Matrix Theory Demo
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| endothelial-mural | |
| endothelial-mural | |
| endothelial-mural | |
| endothelial-mural | |
| endothelial-mural | |
| endothelial-mural | |
| endothelial-mural | |
| endothelial-mural | |
| endothelial-mural | |
| endothelial-mural | |
| endothelial-mural | |
| endothelial-mural | |
| endothelial-mural | |
| endothelial-mural | |
| endothelial-mural | |
| endothelial-mural | |
| endothelial-mural | |
| endothelial-mural | |
| endothelial-mural | |
| endothelial-mural | |
| endothelial-mural | |
| endothelial-mural |
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| <!DOCTYPE html> | |
| <html> | |
| <head> | |
| <meta charset="utf-8"> | |
| <script src="https://d3js.org/d3.v4.min.js"></script> | |
| <script src="https://cdnjs.cloudflare.com/ajax/libs/noUiSlider/11.1.0/nouislider.min.js"></script> | |
| <link rel="stylesheet" type="text/css" href="https://cdnjs.cloudflare.com/ajax/libs/noUiSlider/11.1.0/nouislider.css"></script> | |
| <style> | |
| #chart { | |
| position: fixed; | |
| left: 0px; | |
| right: 0px; | |
| top: 0px; | |
| bottom: 0px; | |
| z-index: -1; | |
| background-color: white; | |
| } | |
| #menu { | |
| position: fixed; | |
| left: 20px; | |
| top: 20px; | |
| z-index: 1; | |
| border: 1px black; | |
| border-radius: 5px; | |
| background-color: white; | |
| } | |
| .slider { | |
| width: 300px; | |
| margin-left: 10px; | |
| } | |
| body { | |
| font-family: sans-serif | |
| } | |
| .noUi-handle{ | |
| width: 10px !important; | |
| right: -5px !important; | |
| top: -9px !important; | |
| } | |
| .noUi-handle::before{ | |
| left: 5px !important; | |
| } | |
| .noUi-handle::after{ | |
| left: 2px !important; | |
| } | |
| .noUi-horizontal{ | |
| height: 12px !important; | |
| } | |
| </style> | |
| </head> | |
| <body> | |
| <div id="chart"></div> | |
| <div id="menu"> | |
| <div> | |
| Perplexity: <span id="perpVal"></span> | |
| </div> | |
| <br> | |
| <div class="slider" id="perpSlider"></div> | |
| <br> | |
| <div> | |
| lambda range: <span id="lambda1Val"></span> - <span id="lambda2Val"></span> | |
| </div> | |
| <br> | |
| <div class="slider" id="lambdaSlider"></div> | |
| <br> | |
| <button type="button" onclick="demo_l1()">auto l1</button> | |
| <button type="button" onclick="demo_l2()">auto l2</button> | |
| <button type="button" onclick="interval_stop()">stop</button> | |
| </div> | |
| <script> | |
| var perpValue = document.getElementById("perpVal") | |
| var perpSlider = document.getElementById("perpSlider"); | |
| noUiSlider.create(perpSlider, { | |
| start: [30], | |
| connect: true, | |
| range: { | |
| 'min': 10, | |
| 'max': 30 | |
| }, | |
| step: 20 | |
| }); | |
| var lambda1Value = document.getElementById("lambda1Val") | |
| var lambda2Value = document.getElementById("lambda2Val") | |
| var lambdaSlider = document.getElementById("lambdaSlider") | |
| noUiSlider.create(lambdaSlider, { | |
| start: [0, 85], | |
| connect: true, | |
| range: { | |
| 'min': 0, | |
| 'max': 85 | |
| }, | |
| step: 1, | |
| margin: 1 | |
| }); | |
| var chartDiv = document.getElementById("chart"); | |
| var strokeWidth = 1; | |
| var margin = {top: 10, right: 50, bottom: 10, left: 50} | |
| var width = chartDiv.clientWidth - margin.left - margin.right ; | |
| var height = chartDiv.clientHeight - margin.top - margin.bottom - 20; | |
| var x = d3.scaleLinear().range([0, width - margin.right]).domain([-100,100]); | |
| var y = d3.scaleLinear().range([0, height]).domain([100,-100]); | |
| var colorScale = d3.scaleOrdinal() | |
| .domain(['astrocytes','endothelial-mural','interneurons','microglia','oligodendrocytes','pyramidal CA1','pyramidal SS']) | |
| .range(['#66c2a5','#fc8d62','#8da0cb','#e78ac3','#a6d854','#ffd92f','#e5c494']) | |
| /* | |
| function randomCoords(length, max) { | |
| return Array.apply(null, Array(length)).map(function(item, index){ | |
| return {x: Math.floor(Math.random() * max), | |
| y:Math.floor(Math.random() * max)}; | |
| }); | |
| } | |
| */ | |
| var svg = d3.select("body").append("svg") | |
| .attr("width", width + margin.right + margin.left) | |
| .attr("height", height + margin.top + margin.bottom ) | |
| .append("g") | |
| .attr("transform", | |
| "translate(" + margin.left + "," + margin.top + ")"); | |
| d3.text('classes.txt', function(error,text){ | |
| if (error) throw error; | |
| var colors = d3.tsvParseRows(text); | |
| function update(data, index){ | |
| var elem = svg.selectAll("circle") | |
| .data(data) | |
| elem.attr("class", "update") | |
| .transition() | |
| .duration(200) | |
| //.ease(d3.easeElastic.period(0.4)) | |
| //.delay(function(d,i) {return i}) | |
| .attr("cx", function(d) { return x(d[0]); }) | |
| .attr("cy", function(d) { return y(d[1]); }) | |
| elem.enter().append("circle") | |
| .attr("r", "0px") | |
| .attr("fill","dodgerblue") | |
| .attr("cx", function(d) { return x(d[0]); }) | |
| .attr("cy", function(d) { return y(d[1]); }) | |
| .attr('fill', function(d,i){ | |
| //console.log(colors[i][0]) | |
| return colorScale(colors[i][0]) | |
| }) | |
| .transition() | |
| .duration(1500) | |
| .attr("r", "2px") | |
| } | |
| //perp update | |
| perpSlider.noUiSlider.on('slide', function(){ | |
| //console.log('update perp') | |
| perplexity = Math.trunc(perpSlider.noUiSlider.get()) | |
| perpValue.innerHTML = perplexity; | |
| d3.text("https://s3.amazonaws.com/randomly-mouse-cortex-pos/mouse_cortex_" + lambda_1 + "_" + lambda_2 + "_" + perplexity + ".txt", function(error,text){ | |
| if (error) throw error; | |
| var data = d3.tsvParseRows(text) | |
| update(data) | |
| }); | |
| }); | |
| //lambda update | |
| lambdaSlider.noUiSlider.on('set', function(){ | |
| //console.log('update lambda') | |
| lambda_1 = Math.trunc(lambdaSlider.noUiSlider.get()[0]) | |
| lambda_2 = Math.trunc(lambdaSlider.noUiSlider.get()[1]) | |
| lambda1Value.innerHTML = lambda_1; | |
| lambda2Value.innerHTML = lambda_2; | |
| d3.text("https://s3.amazonaws.com/randomly-mouse-cortex-pos/mouse_cortex_" + lambda_1 + "_" + lambda_2 + "_" + perplexity + ".txt", function(error,text){ | |
| if (error) throw error; | |
| var data = d3.tsvParseRows(text) | |
| update(data) | |
| }); | |
| }); | |
| //initial load | |
| var perplexity = 30; | |
| var lambda_1 = 0; | |
| var lambda_2 = 85; | |
| perpValue.innerHTML = perplexity; | |
| lambda1Value.innerHTML = lambda_1; | |
| lambda2Value.innerHTML = lambda_2; | |
| d3.text("https://s3.amazonaws.com/randomly-mouse-cortex-pos/mouse_cortex_" + lambda_1 + "_" + lambda_2 + "_" + perplexity + ".txt", function(error,text){ | |
| if (error) throw error; | |
| var data = d3.tsvParseRows(text) | |
| update(data) | |
| }); | |
| }) | |
| var interval_l1, interval_l2; | |
| function demo_l1() { | |
| var i = 1; | |
| if(interval_l1){ | |
| interval_l1.stop(); | |
| } | |
| if(interval_l2){ | |
| interval_l2.stop(); | |
| } | |
| lambdaSlider.noUiSlider.set([80,85]); | |
| interval_l1 = d3.interval(function(elapsed) { | |
| if (elapsed > 25500) { | |
| this.stop(); // <== !!! | |
| return; | |
| } | |
| lambdaSlider.noUiSlider.set([80-i*5,null]); | |
| i++; | |
| }, 1500); | |
| } | |
| function demo_l2() { | |
| var i = 1; | |
| if(interval_l1){ | |
| interval_l1.stop(); | |
| } | |
| if(interval_l2){ | |
| interval_l2.stop(); | |
| } | |
| lambdaSlider.noUiSlider.set([0,85]); | |
| interval_l2 = d3.interval(function(elapsed) { | |
| if (elapsed > 25500) { | |
| this.stop(); // <== !!! | |
| return; | |
| } | |
| lambdaSlider.noUiSlider.set([null,85-(i*5)]); | |
| i++; | |
| }, 1500); | |
| } | |
| function interval_stop() { | |
| if(interval_l1){ | |
| interval_l1.stop(); | |
| } | |
| if(interval_l2){ | |
| interval_l2.stop(); | |
| } | |
| } | |
| </script> | |
| </body> | |
| </html> |
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