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Install R and RStudio on Ubuntu 19.10 with essential libraries for data science. Based on pachamaltese/r_ubuntu_17_10.sh (for Ubuntu 17.10). Note: You need to make sure the default library location - /usr/local/lib/R/site-packages - is writable .
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| # Add repo to install the last R | |
| sudo apt install apt-transport-https software-properties-common | |
| sudo apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9 | |
| sudo add-apt-repository 'deb https://cloud.r-project.org/bin/linux/ubuntu disco-cran35/' | |
| # Install R | |
| sudo apt update | |
| sudo apt install gdebi libxml2-dev libssl-dev libcurl4-openssl-dev libopenblas-dev r-base r-base-dev | |
| # Install RStudio | |
| cd ~/Downloads | |
| wget https://download1.rstudio.org/desktop/bionic/amd64/rstudio-1.2.5001-amd64.deb | |
| sudo gdebi rstudio-1.2.5001-amd64.deb | |
| # I really don't know if this is necessary anymore. | |
| test -r ~/.bash_profile && printf '\nexport QT_STYLE_OVERRIDE=gtk\n' | sudo tee -a ~/.bash_profile | |
| test -r ~/.zshrc && printf '\nexport QT_STYLE_OVERRIDE=gtk\n' | sudo tee -a ~/.zshrc | |
| printf '\nexport QT_STYLE_OVERRIDE=gtk\n' | sudo tee -a ~/.profile | |
| # Install common packages | |
| R --vanilla << EOF | |
| install.packages(c("tidyverse","data.table","dtplyr","devtools","roxygen2","bit64","readr"), repos = "https://cran.rstudio.com/") | |
| q() | |
| EOF | |
| # Install TDD packages | |
| R --vanilla << EOF | |
| install.packages("testthis") | |
| q() | |
| EOF | |
| # Export to HTML/Excel | |
| R --vanilla << EOF | |
| install.packages(c("htmlTable","openxlsx"), repos = "https://cran.rstudio.com/") | |
| q() | |
| EOF | |
| # Blog tools | |
| R --vanilla << EOF | |
| install.packages(c("knitr","rmarkdown"), repos='http://cran.us.r-project.org') | |
| q() | |
| EOF | |
| sudo apt install python-pip | |
| sudo apt install python3-pip | |
| sudo -H pip install markdown rpy2==2.7.1 pelican==3.7.1 | |
| sudo -H pip3 install markdown rpy2==2.9.3 pelican==3.7.1 | |
| # PDF extraction tools | |
| sudo apt install libpoppler-cpp-dev default-jre default-jdk r-cran-rjava | |
| sudo R CMD javareconf | |
| R --vanilla << EOF | |
| library(devtools) | |
| install.packages("pdftools", repos = "https://cran.rstudio.com/") | |
| install_github("ropensci/tabulizer") | |
| q() | |
| EOF | |
| # TTF/OTF fonts usage | |
| sudo apt install libfreetype6-dev | |
| R --vanilla << EOF | |
| install.packages("showtext", repos = "https://cran.rstudio.com/") | |
| q() | |
| EOF | |
| # Cairo for graphic devices | |
| sudo apt install libgtk2.0-dev libxt-dev libcairo2-dev | |
| R --vanilla << EOF | |
| install.packages("Cairo", repos = "https://cran.rstudio.com/") | |
| q() | |
| EOF | |
| # Texlive for Latex/knitr | |
| sudo apt -y install texlive | |
| sudo apt -y install texlive-latex-recommended texlive-pictures texlive-latex-extra |
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